Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
VCANP13611 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
VCANP13611 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC22.61■■□□□ 1.21
VCANP13611 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.61■■□□□ 1.21
VCANP13611 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
VCANP13611 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
VCANP13611 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
VCANP13611 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC22.61■■□□□ 1.21
VCANP13611 ALDH1A3-203ENST00000557963 1670 ntBASIC22.61■■□□□ 1.21
VCANP13611 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.61■■□□□ 1.21
VCANP13611 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
VCANP13611 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
VCANP13611 BX276092.2-201ENST00000417668 665 ntBASIC22.61■■□□□ 1.21
VCANP13611 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
VCANP13611 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC22.61■■□□□ 1.21
VCANP13611 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
VCANP13611 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC22.6■■□□□ 1.21
VCANP13611 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VCANP13611 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC22.59■■□□□ 1.21
VCANP13611 C1QBPP2-201ENST00000528754 825 ntBASIC22.59■■□□□ 1.21
VCANP13611 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC22.59■■□□□ 1.21
VCANP13611 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
VCANP13611 DUSP8P5-201ENST00000422884 1815 ntBASIC22.59■■□□□ 1.21
VCANP13611 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC22.59■■□□□ 1.21
VCANP13611 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC22.59■■□□□ 1.21
VCANP13611 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
VCANP13611 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC22.59■■□□□ 1.21
VCANP13611 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC22.59■■□□□ 1.21
VCANP13611 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
VCANP13611 MFF-207ENST00000409565 1548 ntTSL 2 BASIC22.59■■□□□ 1.21
VCANP13611 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.59■■□□□ 1.21
VCANP13611 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
VCANP13611 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC22.59■■□□□ 1.21
VCANP13611 TSPY15P-201ENST00000457163 923 ntBASIC22.59■■□□□ 1.21
VCANP13611 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.21
VCANP13611 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
VCANP13611 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC22.58■■□□□ 1.21
VCANP13611 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC22.58■■□□□ 1.2
VCANP13611 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC22.58■■□□□ 1.2
VCANP13611 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC22.58■■□□□ 1.2
VCANP13611 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
VCANP13611 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
VCANP13611 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
VCANP13611 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
VCANP13611 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
VCANP13611 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC22.57■■□□□ 1.2
VCANP13611 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC22.57■■□□□ 1.2
VCANP13611 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
VCANP13611 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
VCANP13611 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
VCANP13611 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
VCANP13611 BET1L-204ENST00000410108 637 ntTSL 3 BASIC22.56■■□□□ 1.2
VCANP13611 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.56■■□□□ 1.2
VCANP13611 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
VCANP13611 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
VCANP13611 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
VCANP13611 AC097658.1-201ENST00000475555 843 ntBASIC22.56■■□□□ 1.2
VCANP13611 AC092803.2-201ENST00000564287 1899 ntBASIC22.56■■□□□ 1.2
VCANP13611 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
VCANP13611 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC22.56■■□□□ 1.2
VCANP13611 PLLP-204ENST00000569059 665 ntTSL 3 BASIC22.56■■□□□ 1.2
VCANP13611 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
VCANP13611 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
VCANP13611 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC22.55■■□□□ 1.2
VCANP13611 RPPH1-201ENST00000516869 333 ntBASIC22.55■■□□□ 1.2
VCANP13611 FAM197Y4-202ENST00000622692 608 ntBASIC22.55■■□□□ 1.2
VCANP13611 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
VCANP13611 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
VCANP13611 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
VCANP13611 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC22.55■■□□□ 1.2
VCANP13611 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
VCANP13611 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC22.55■■□□□ 1.2
VCANP13611 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
VCANP13611 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
VCANP13611 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC22.54■■□□□ 1.2
VCANP13611 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
VCANP13611 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VCANP13611 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC22.54■■□□□ 1.2
VCANP13611 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC22.54■■□□□ 1.2
VCANP13611 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC22.54■■□□□ 1.2
VCANP13611 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC22.54■■□□□ 1.2
VCANP13611 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.54■■□□□ 1.2
VCANP13611 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
VCANP13611 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VCANP13611 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC22.54■■□□□ 1.2
VCANP13611 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
VCANP13611 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
VCANP13611 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
VCANP13611 AC055733.4-201ENST00000638462 1354 ntBASIC22.54■■□□□ 1.2
VCANP13611 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
VCANP13611 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
VCANP13611 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VCANP13611 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC22.53■■□□□ 1.2
VCANP13611 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
VCANP13611 HLA-L-211ENST00000482052 1765 ntBASIC22.53■■□□□ 1.2
VCANP13611 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC22.53■■□□□ 1.2
VCANP13611 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
VCANP13611 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
VCANP13611 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC22.53■■□□□ 1.2
VCANP13611 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms