Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HLA-DQB2P05538 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HLA-DQB2P05538 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HLA-DQB2P05538 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HLA-DQB2P05538 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.92■■□□□ 1.1
HLA-DQB2P05538 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.92■■□□□ 1.1
HLA-DQB2P05538 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
HLA-DQB2P05538 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.92■■□□□ 1.1
HLA-DQB2P05538 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.92■■□□□ 1.1
HLA-DQB2P05538 FAM99A-202ENST00000538190 1989 ntBASIC21.92■■□□□ 1.1
HLA-DQB2P05538 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HLA-DQB2P05538 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
HLA-DQB2P05538 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HLA-DQB2P05538 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.91■■□□□ 1.1
HLA-DQB2P05538 AC105265.2-201ENST00000467189 838 ntBASIC21.91■■□□□ 1.1
HLA-DQB2P05538 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.91■■□□□ 1.1
HLA-DQB2P05538 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.91■■□□□ 1.1
HLA-DQB2P05538 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HLA-DQB2P05538 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HLA-DQB2P05538 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HLA-DQB2P05538 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.91■■□□□ 1.1
HLA-DQB2P05538 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 MIR572-201ENST00000384983 95 ntBASIC21.9■■□□□ 1.1
HLA-DQB2P05538 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HLA-DQB2P05538 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
HLA-DQB2P05538 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.89■■□□□ 1.1
HLA-DQB2P05538 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
HLA-DQB2P05538 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HLA-DQB2P05538 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HLA-DQB2P05538 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.89■■□□□ 1.09
HLA-DQB2P05538 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.89■■□□□ 1.09
HLA-DQB2P05538 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
HLA-DQB2P05538 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HLA-DQB2P05538 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.89■■□□□ 1.09
HLA-DQB2P05538 AC105233.4-201ENST00000642045 216 ntBASIC21.89■■□□□ 1.09
HLA-DQB2P05538 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
HLA-DQB2P05538 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HLA-DQB2P05538 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HLA-DQB2P05538 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
HLA-DQB2P05538 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.89■■□□□ 1.09
HLA-DQB2P05538 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
HLA-DQB2P05538 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
HLA-DQB2P05538 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 AP004607.7-201ENST00000527152 1677 ntBASIC21.88■■□□□ 1.09
HLA-DQB2P05538 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.88■■□□□ 1.09
HLA-DQB2P05538 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HLA-DQB2P05538 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HLA-DQB2P05538 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HLA-DQB2P05538 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
HLA-DQB2P05538 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HLA-DQB2P05538 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.87■■□□□ 1.09
HLA-DQB2P05538 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.87■■□□□ 1.09
HLA-DQB2P05538 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HLA-DQB2P05538 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
HLA-DQB2P05538 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.87■■□□□ 1.09
HLA-DQB2P05538 AC026471.6-201ENST00000622954 1905 ntBASIC21.86■■□□□ 1.09
HLA-DQB2P05538 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DQB2P05538 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
HLA-DQB2P05538 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms