Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC27.17■■□□□ 1.94
NPHP1O15259 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
NPHP1O15259 METTL15-202ENST00000403099 795 ntTSL 5 BASIC27.17■■□□□ 1.94
NPHP1O15259 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC27.17■■□□□ 1.94
NPHP1O15259 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
NPHP1O15259 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
NPHP1O15259 AL138781.1-201ENST00000566567 1274 ntBASIC27.17■■□□□ 1.94
NPHP1O15259 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
NPHP1O15259 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
NPHP1O15259 MFF-207ENST00000409565 1548 ntTSL 2 BASIC27.16■■□□□ 1.94
NPHP1O15259 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
NPHP1O15259 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
NPHP1O15259 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
NPHP1O15259 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
NPHP1O15259 OAS3-207ENST00000551007 998 ntTSL 2 BASIC27.16■■□□□ 1.94
NPHP1O15259 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC27.16■■□□□ 1.94
NPHP1O15259 TFG-210ENST00000620299 1289 ntTSL 5 BASIC27.16■■□□□ 1.94
NPHP1O15259 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
NPHP1O15259 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC27.16■■□□□ 1.94
NPHP1O15259 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC27.16■■□□□ 1.94
NPHP1O15259 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
NPHP1O15259 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC27.15■■□□□ 1.94
NPHP1O15259 SERP1-208ENST00000491660 830 ntTSL 2 BASIC27.15■■□□□ 1.94
NPHP1O15259 SLC7A5P2-201ENST00000553010 536 ntBASIC27.15■■□□□ 1.94
NPHP1O15259 RGMA-211ENST00000557420 989 ntTSL 3 BASIC27.15■■□□□ 1.94
NPHP1O15259 KLF13-207ENST00000560473 489 ntTSL 3 BASIC27.15■■□□□ 1.94
NPHP1O15259 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC27.15■■□□□ 1.94
NPHP1O15259 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC27.15■■□□□ 1.94
NPHP1O15259 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
NPHP1O15259 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
NPHP1O15259 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC27.15■■□□□ 1.94
NPHP1O15259 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC27.15■■□□□ 1.94
NPHP1O15259 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
NPHP1O15259 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
NPHP1O15259 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC27.14■■□□□ 1.94
NPHP1O15259 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC27.14■■□□□ 1.94
NPHP1O15259 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC27.14■■□□□ 1.94
NPHP1O15259 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.94
NPHP1O15259 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
NPHP1O15259 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
NPHP1O15259 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC27.14■■□□□ 1.94
NPHP1O15259 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC27.14■■□□□ 1.94
NPHP1O15259 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC27.14■■□□□ 1.94
NPHP1O15259 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC27.14■■□□□ 1.93
NPHP1O15259 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
NPHP1O15259 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP1O15259 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC27.13■■□□□ 1.93
NPHP1O15259 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP1O15259 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC27.13■■□□□ 1.93
NPHP1O15259 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC27.13■■□□□ 1.93
NPHP1O15259 AC066615.1-201ENST00000640911 628 ntBASIC27.13■■□□□ 1.93
NPHP1O15259 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC27.13■■□□□ 1.93
NPHP1O15259 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC27.12■■□□□ 1.93
NPHP1O15259 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC27.12■■□□□ 1.93
NPHP1O15259 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC27.12■■□□□ 1.93
NPHP1O15259 GUSBP6-202ENST00000438529 1198 ntBASIC27.12■■□□□ 1.93
NPHP1O15259 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC27.12■■□□□ 1.93
NPHP1O15259 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC27.12■■□□□ 1.93
NPHP1O15259 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP1O15259 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP1O15259 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP1O15259 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC27.11■■□□□ 1.93
NPHP1O15259 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP1O15259 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP1O15259 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP1O15259 FAM201B-201ENST00000458407 597 ntBASIC27.11■■□□□ 1.93
NPHP1O15259 AF201337.1-201ENST00000520239 748 ntBASIC27.11■■□□□ 1.93
NPHP1O15259 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC27.11■■□□□ 1.93
NPHP1O15259 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP1O15259 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC27.11■■□□□ 1.93
NPHP1O15259 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP1O15259 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP1O15259 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP1O15259 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP1O15259 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC27.1■■□□□ 1.93
NPHP1O15259 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP1O15259 AC105036.2-201ENST00000569468 176 ntBASIC27.1■■□□□ 1.93
NPHP1O15259 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP1O15259 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP1O15259 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC27.1■■□□□ 1.93
NPHP1O15259 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC27.1■■□□□ 1.93
NPHP1O15259 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP1O15259 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
NPHP1O15259 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
NPHP1O15259 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
NPHP1O15259 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC27.09■■□□□ 1.93
NPHP1O15259 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC27.09■■□□□ 1.93
NPHP1O15259 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC27.09■■□□□ 1.93
NPHP1O15259 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
NPHP1O15259 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC27.08■■□□□ 1.93
NPHP1O15259 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
NPHP1O15259 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
NPHP1O15259 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC27.08■■□□□ 1.93
NPHP1O15259 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC27.08■■□□□ 1.93
NPHP1O15259 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC27.08■■□□□ 1.93
NPHP1O15259 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC27.08■■□□□ 1.93
NPHP1O15259 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
NPHP1O15259 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC27.08■■□□□ 1.93
NPHP1O15259 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC27.07■■□□□ 1.92
NPHP1O15259 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC27.07■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms