Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC23.22■■□□□ 1.31
NKX2-4Q9H2Z4 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC23.22■■□□□ 1.31
NKX2-4Q9H2Z4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NKX2-4Q9H2Z4 AC128676.1-201ENST00000454392 318 ntBASIC23.22■■□□□ 1.31
NKX2-4Q9H2Z4 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC23.22■■□□□ 1.31
NKX2-4Q9H2Z4 AC138907.5-202ENST00000569484 235 ntBASIC23.22■■□□□ 1.31
NKX2-4Q9H2Z4 AC016405.3-201ENST00000607710 860 ntBASIC23.22■■□□□ 1.31
NKX2-4Q9H2Z4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
NKX2-4Q9H2Z4 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC23.22■■□□□ 1.31
NKX2-4Q9H2Z4 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
NKX2-4Q9H2Z4 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 BX276092.2-201ENST00000417668 665 ntBASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 OR10C1-204ENST00000622521 1039 ntBASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
NKX2-4Q9H2Z4 AC022211.4-201ENST00000625094 2161 ntBASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 AC055733.4-201ENST00000638462 1354 ntBASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NKX2-4Q9H2Z4 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
NKX2-4Q9H2Z4 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
NKX2-4Q9H2Z4 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
NKX2-4Q9H2Z4 UNC93B4-201ENST00000505679 747 ntBASIC23.19■■□□□ 1.3
NKX2-4Q9H2Z4 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
NKX2-4Q9H2Z4 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC23.19■■□□□ 1.3
NKX2-4Q9H2Z4 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.19■■□□□ 1.3
NKX2-4Q9H2Z4 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 GAS7-202ENST00000396115 929 ntTSL 5 BASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 AC097658.1-201ENST00000475555 843 ntBASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 MMAB-206ENST00000540016 945 ntTSL 3 BASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 AC008694.1-202ENST00000636953 945 ntBASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 MYC-209ENST00000641252 345 ntBASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 AL353803.4-201ENST00000565882 1934 ntBASIC23.18■■□□□ 1.3
NKX2-4Q9H2Z4 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NKX2-4Q9H2Z4 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
NKX2-4Q9H2Z4 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.17■■□□□ 1.3
NKX2-4Q9H2Z4 MMD2-204ENST00000612910 778 ntTSL 5 BASIC23.17■■□□□ 1.3
NKX2-4Q9H2Z4 DUSP8P5-201ENST00000422884 1815 ntBASIC23.17■■□□□ 1.3
NKX2-4Q9H2Z4 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
NKX2-4Q9H2Z4 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC23.16■■□□□ 1.3
NKX2-4Q9H2Z4 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC23.16■■□□□ 1.3
NKX2-4Q9H2Z4 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
NKX2-4Q9H2Z4 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC23.16■■□□□ 1.3
NKX2-4Q9H2Z4 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC23.16■■□□□ 1.3
NKX2-4Q9H2Z4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC23.16■■□□□ 1.3
NKX2-4Q9H2Z4 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC23.16■■□□□ 1.3
NKX2-4Q9H2Z4 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.16■■□□□ 1.3
NKX2-4Q9H2Z4 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.16■■□□□ 1.3
NKX2-4Q9H2Z4 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.16■■□□□ 1.3
NKX2-4Q9H2Z4 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NKX2-4Q9H2Z4 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NKX2-4Q9H2Z4 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC23.15■■□□□ 1.3
NKX2-4Q9H2Z4 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NKX2-4Q9H2Z4 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NKX2-4Q9H2Z4 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
NKX2-4Q9H2Z4 AL512625.2-201ENST00000417533 625 ntBASIC23.15■■□□□ 1.3
NKX2-4Q9H2Z4 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.15■■□□□ 1.3
NKX2-4Q9H2Z4 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC23.15■■□□□ 1.3
NKX2-4Q9H2Z4 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC23.15■■□□□ 1.3
NKX2-4Q9H2Z4 AC069236.1-201ENST00000604339 616 ntBASIC23.15■■□□□ 1.3
NKX2-4Q9H2Z4 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms