Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHROOM3Q8TF72 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
SHROOM3Q8TF72 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
SHROOM3Q8TF72 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC22.13■■□□□ 1.13
SHROOM3Q8TF72 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM3Q8TF72 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC22.13■■□□□ 1.13
SHROOM3Q8TF72 C11orf96-202ENST00000528572 1834 ntBASIC22.13■■□□□ 1.13
SHROOM3Q8TF72 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM3Q8TF72 AC010141.3-201ENST00000456659 717 ntBASIC22.13■■□□□ 1.13
SHROOM3Q8TF72 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM3Q8TF72 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM3Q8TF72 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM3Q8TF72 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC22.13■■□□□ 1.13
SHROOM3Q8TF72 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM3Q8TF72 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM3Q8TF72 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 RARRES2P11-201ENST00000635158 484 ntBASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
SHROOM3Q8TF72 USP45-205ENST00000472914 1617 ntTSL 5 BASIC22.11■■□□□ 1.13
SHROOM3Q8TF72 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHROOM3Q8TF72 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHROOM3Q8TF72 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
SHROOM3Q8TF72 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHROOM3Q8TF72 AL034346.1-201ENST00000568244 1277 ntBASIC22.11■■□□□ 1.13
SHROOM3Q8TF72 AL355001.2-201ENST00000620617 1191 ntBASIC22.11■■□□□ 1.13
SHROOM3Q8TF72 AL136967.2-201ENST00000623968 743 ntBASIC22.11■■□□□ 1.13
SHROOM3Q8TF72 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SHROOM3Q8TF72 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
SHROOM3Q8TF72 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SHROOM3Q8TF72 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC22.1■■□□□ 1.13
SHROOM3Q8TF72 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SHROOM3Q8TF72 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SHROOM3Q8TF72 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC22.1■■□□□ 1.13
SHROOM3Q8TF72 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SHROOM3Q8TF72 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SHROOM3Q8TF72 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SHROOM3Q8TF72 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 MIR572-201ENST00000384983 95 ntBASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 IKBKGP1-201ENST00000612193 1073 ntBASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC22.09■■□□□ 1.13
SHROOM3Q8TF72 GRAMD4P2-201ENST00000423297 1097 ntBASIC22.08■■□□□ 1.13
SHROOM3Q8TF72 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC22.08■■□□□ 1.13
SHROOM3Q8TF72 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.08■■□□□ 1.13
SHROOM3Q8TF72 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
SHROOM3Q8TF72 AP004607.7-201ENST00000527152 1677 ntBASIC22.08■■□□□ 1.13
SHROOM3Q8TF72 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
SHROOM3Q8TF72 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC22.08■■□□□ 1.13
SHROOM3Q8TF72 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SHROOM3Q8TF72 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
SHROOM3Q8TF72 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
SHROOM3Q8TF72 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC22.08■■□□□ 1.12
SHROOM3Q8TF72 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
SHROOM3Q8TF72 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC22.08■■□□□ 1.12
SHROOM3Q8TF72 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC22.08■■□□□ 1.12
SHROOM3Q8TF72 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
SHROOM3Q8TF72 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC22.07■■□□□ 1.12
SHROOM3Q8TF72 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC22.06■■□□□ 1.12
SHROOM3Q8TF72 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHROOM3Q8TF72 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHROOM3Q8TF72 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHROOM3Q8TF72 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms