Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 OR7E47P-201ENST00000546390 1422 ntBASIC24.13■■□□□ 1.45
CCDC60Q8IWA6 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC60Q8IWA6 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC24.13■■□□□ 1.45
CCDC60Q8IWA6 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.13■■□□□ 1.45
CCDC60Q8IWA6 AL137784.2-201ENST00000607332 1000 ntBASIC24.13■■□□□ 1.45
CCDC60Q8IWA6 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC24.13■■□□□ 1.45
CCDC60Q8IWA6 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC60Q8IWA6 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC60Q8IWA6 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
CCDC60Q8IWA6 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC60Q8IWA6 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC60Q8IWA6 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC60Q8IWA6 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC60Q8IWA6 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC24.12■■□□□ 1.45
CCDC60Q8IWA6 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC24.12■■□□□ 1.45
CCDC60Q8IWA6 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
CCDC60Q8IWA6 AC079140.4-201ENST00000507448 529 ntBASIC24.12■■□□□ 1.45
CCDC60Q8IWA6 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC24.12■■□□□ 1.45
CCDC60Q8IWA6 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC24.12■■□□□ 1.45
CCDC60Q8IWA6 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
CCDC60Q8IWA6 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC60Q8IWA6 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC60Q8IWA6 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC24.11■■□□□ 1.45
CCDC60Q8IWA6 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC60Q8IWA6 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC24.11■■□□□ 1.45
CCDC60Q8IWA6 AP004607.7-201ENST00000527152 1677 ntBASIC24.11■■□□□ 1.45
CCDC60Q8IWA6 C1orf229-201ENST00000623686 2258 ntBASIC24.1■■□□□ 1.45
CCDC60Q8IWA6 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC60Q8IWA6 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC60Q8IWA6 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC24.1■■□□□ 1.45
CCDC60Q8IWA6 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC24.1■■□□□ 1.45
CCDC60Q8IWA6 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC24.1■■□□□ 1.45
CCDC60Q8IWA6 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC60Q8IWA6 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC24.1■■□□□ 1.45
CCDC60Q8IWA6 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
CCDC60Q8IWA6 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 AC055733.4-201ENST00000638462 1354 ntBASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC24.09■■□□□ 1.45
CCDC60Q8IWA6 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC24.08■■□□□ 1.45
CCDC60Q8IWA6 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
CCDC60Q8IWA6 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CCDC60Q8IWA6 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
CCDC60Q8IWA6 AC004911.1-201ENST00000416316 871 ntBASIC24.08■■□□□ 1.45
CCDC60Q8IWA6 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC24.08■■□□□ 1.45
CCDC60Q8IWA6 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CCDC60Q8IWA6 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CCDC60Q8IWA6 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
CCDC60Q8IWA6 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
CCDC60Q8IWA6 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
CCDC60Q8IWA6 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC24.08■■□□□ 1.44
CCDC60Q8IWA6 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CCDC60Q8IWA6 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC24.07■■□□□ 1.44
CCDC60Q8IWA6 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CCDC60Q8IWA6 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC24.07■■□□□ 1.44
CCDC60Q8IWA6 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC24.07■■□□□ 1.44
CCDC60Q8IWA6 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC24.07■■□□□ 1.44
CCDC60Q8IWA6 AC139530.1-201ENST00000575312 1977 ntBASIC24.07■■□□□ 1.44
CCDC60Q8IWA6 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC24.07■■□□□ 1.44
CCDC60Q8IWA6 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CCDC60Q8IWA6 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CCDC60Q8IWA6 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CCDC60Q8IWA6 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 STX7-201ENST00000367937 1090 ntTSL 5 BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
CCDC60Q8IWA6 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms