Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 DLX3-202ENST00000512495 834 ntTSL 2 BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC25.11■■□□□ 1.61
CCDC144BQ3MJ40 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC144BQ3MJ40 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC144BQ3MJ40 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC144BQ3MJ40 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
CCDC144BQ3MJ40 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC144BQ3MJ40 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC25.11■■□□□ 1.61
CCDC144BQ3MJ40 NT5C3AP1-201ENST00000394500 1012 ntBASIC25.11■■□□□ 1.61
CCDC144BQ3MJ40 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC144BQ3MJ40 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC25.11■■□□□ 1.61
CCDC144BQ3MJ40 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC144BQ3MJ40 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
CCDC144BQ3MJ40 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC144BQ3MJ40 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC144BQ3MJ40 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC144BQ3MJ40 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
CCDC144BQ3MJ40 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
CCDC144BQ3MJ40 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC144BQ3MJ40 MPST-204ENST00000404393 1329 ntTSL 5 BASIC25.1■■□□□ 1.61
CCDC144BQ3MJ40 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC25.09■■□□□ 1.61
CCDC144BQ3MJ40 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCDC144BQ3MJ40 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCDC144BQ3MJ40 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
CCDC144BQ3MJ40 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CCDC144BQ3MJ40 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC25.09■■□□□ 1.61
CCDC144BQ3MJ40 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC25.09■■□□□ 1.61
CCDC144BQ3MJ40 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
CCDC144BQ3MJ40 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
CCDC144BQ3MJ40 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
CCDC144BQ3MJ40 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
CCDC144BQ3MJ40 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC25.09■■□□□ 1.61
CCDC144BQ3MJ40 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC144BQ3MJ40 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC25.08■■□□□ 1.61
CCDC144BQ3MJ40 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC25.08■■□□□ 1.61
CCDC144BQ3MJ40 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC144BQ3MJ40 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC144BQ3MJ40 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC144BQ3MJ40 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC144BQ3MJ40 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC25.08■■□□□ 1.61
CCDC144BQ3MJ40 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC25.08■■□□□ 1.61
CCDC144BQ3MJ40 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC144BQ3MJ40 AC105233.4-201ENST00000642045 216 ntBASIC25.08■■□□□ 1.61
CCDC144BQ3MJ40 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC144BQ3MJ40 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC144BQ3MJ40 STX4-202ENST00000394998 1498 ntTSL 2 BASIC25.08■■□□□ 1.6
CCDC144BQ3MJ40 AC127496.7-201ENST00000625110 1798 ntBASIC25.08■■□□□ 1.6
CCDC144BQ3MJ40 AC137767.1-201ENST00000602918 1920 ntBASIC25.08■■□□□ 1.6
CCDC144BQ3MJ40 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCDC144BQ3MJ40 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CCDC144BQ3MJ40 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCDC144BQ3MJ40 COMT-203ENST00000403184 2217 ntTSL 2 BASIC25.07■■□□□ 1.6
CCDC144BQ3MJ40 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCDC144BQ3MJ40 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CCDC144BQ3MJ40 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC25.07■■□□□ 1.6
CCDC144BQ3MJ40 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC25.07■■□□□ 1.6
CCDC144BQ3MJ40 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC25.07■■□□□ 1.6
CCDC144BQ3MJ40 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCDC144BQ3MJ40 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC25.07■■□□□ 1.6
CCDC144BQ3MJ40 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
CCDC144BQ3MJ40 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC144BQ3MJ40 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC144BQ3MJ40 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC144BQ3MJ40 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
CCDC144BQ3MJ40 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC25.06■■□□□ 1.6
CCDC144BQ3MJ40 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC144BQ3MJ40 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC144BQ3MJ40 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
CCDC144BQ3MJ40 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC144BQ3MJ40 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC144BQ3MJ40 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC144BQ3MJ40 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC144BQ3MJ40 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC144BQ3MJ40 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC144BQ3MJ40 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC144BQ3MJ40 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC144BQ3MJ40 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
CCDC144BQ3MJ40 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC25.05■■□□□ 1.6
CCDC144BQ3MJ40 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
CCDC144BQ3MJ40 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC25.05■■□□□ 1.6
CCDC144BQ3MJ40 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC144BQ3MJ40 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms