Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDCBPO00560 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
SDCBPO00560 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDCBPO00560 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDCBPO00560 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.31■□□□□ 0.52
SDCBPO00560 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SDCBPO00560 TRIR-205ENST00000592273 783 ntTSL 3 BASIC18.31■□□□□ 0.52
SDCBPO00560 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SDCBPO00560 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDCBPO00560 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDCBPO00560 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDCBPO00560 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SDCBPO00560 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDCBPO00560 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDCBPO00560 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDCBPO00560 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.3■□□□□ 0.52
SDCBPO00560 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.3■□□□□ 0.52
SDCBPO00560 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDCBPO00560 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDCBPO00560 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SDCBPO00560 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SDCBPO00560 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDCBPO00560 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDCBPO00560 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.3■□□□□ 0.52
SDCBPO00560 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
SDCBPO00560 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SDCBPO00560 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDCBPO00560 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDCBPO00560 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SDCBPO00560 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SDCBPO00560 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.29■□□□□ 0.52
SDCBPO00560 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
SDCBPO00560 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.29■□□□□ 0.52
SDCBPO00560 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDCBPO00560 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SDCBPO00560 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SDCBPO00560 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDCBPO00560 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDCBPO00560 GUSBP5-201ENST00000418136 578 ntBASIC18.29■□□□□ 0.52
SDCBPO00560 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.29■□□□□ 0.52
SDCBPO00560 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.29■□□□□ 0.52
SDCBPO00560 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SDCBPO00560 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.29■□□□□ 0.52
SDCBPO00560 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC18.29■□□□□ 0.52
SDCBPO00560 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SDCBPO00560 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDCBPO00560 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDCBPO00560 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDCBPO00560 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.29■□□□□ 0.52
SDCBPO00560 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SDCBPO00560 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SDCBPO00560 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SDCBPO00560 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDCBPO00560 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDCBPO00560 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDCBPO00560 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDCBPO00560 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.28■□□□□ 0.52
SDCBPO00560 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDCBPO00560 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC18.28■□□□□ 0.52
SDCBPO00560 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC18.28■□□□□ 0.52
SDCBPO00560 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC18.28■□□□□ 0.52
SDCBPO00560 DUX4L4-201ENST00000566884 1269 ntBASIC18.28■□□□□ 0.52
SDCBPO00560 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDCBPO00560 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDCBPO00560 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDCBPO00560 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SDCBPO00560 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
SDCBPO00560 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SDCBPO00560 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC18.27■□□□□ 0.52
SDCBPO00560 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.27■□□□□ 0.52
SDCBPO00560 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.27■□□□□ 0.52
SDCBPO00560 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SDCBPO00560 AL117332.1-201ENST00000622628 974 ntBASIC18.27■□□□□ 0.52
SDCBPO00560 AC009086.3-201ENST00000623486 1008 ntBASIC18.27■□□□□ 0.52
SDCBPO00560 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SDCBPO00560 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SDCBPO00560 C17orf82-201ENST00000623772 1530 ntBASIC18.27■□□□□ 0.51
SDCBPO00560 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.27■□□□□ 0.51
SDCBPO00560 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
SDCBPO00560 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.27■□□□□ 0.51
SDCBPO00560 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SDCBPO00560 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.51
SDCBPO00560 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.26■□□□□ 0.51
SDCBPO00560 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SDCBPO00560 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SDCBPO00560 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.26■□□□□ 0.51
SDCBPO00560 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.26■□□□□ 0.51
SDCBPO00560 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC18.26■□□□□ 0.51
SDCBPO00560 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
SDCBPO00560 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
SDCBPO00560 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SDCBPO00560 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SDCBPO00560 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SDCBPO00560 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SDCBPO00560 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.25■□□□□ 0.51
SDCBPO00560 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.25■□□□□ 0.51
SDCBPO00560 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SDCBPO00560 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SDCBPO00560 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SDCBPO00560 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms