Protein–RNA interactions for Protein: Q99MQ5

Col25a1, Collagen alpha-1(XXV) chain, mousemouse

Predictions only

Length 666 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col25a1Q99MQ5 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Col25a1Q99MQ5 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
Col25a1Q99MQ5 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
Col25a1Q99MQ5 Gm11175-201ENSMUST00000116172 543 ntBASIC26.97■■□□□ 1.91
Col25a1Q99MQ5 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Col25a1Q99MQ5 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Col25a1Q99MQ5 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Col25a1Q99MQ5 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Col25a1Q99MQ5 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Col25a1Q99MQ5 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC26.92■■□□□ 1.9
Col25a1Q99MQ5 Gm7432-201ENSMUST00000210343 879 ntBASIC26.91■■□□□ 1.9
Col25a1Q99MQ5 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Col25a1Q99MQ5 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Col25a1Q99MQ5 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
Col25a1Q99MQ5 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Col25a1Q99MQ5 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
Col25a1Q99MQ5 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC26.89■■□□□ 1.9
Col25a1Q99MQ5 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
Col25a1Q99MQ5 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Col25a1Q99MQ5 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC26.87■■□□□ 1.89
Col25a1Q99MQ5 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC26.86■■□□□ 1.89
Col25a1Q99MQ5 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC26.85■■□□□ 1.89
Col25a1Q99MQ5 Gm42809-201ENSMUST00000198429 1138 ntBASIC26.81■■□□□ 1.88
Col25a1Q99MQ5 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC26.81■■□□□ 1.88
Col25a1Q99MQ5 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Col25a1Q99MQ5 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
Col25a1Q99MQ5 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Col25a1Q99MQ5 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Col25a1Q99MQ5 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
Col25a1Q99MQ5 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Col25a1Q99MQ5 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC26.74■■□□□ 1.87
Col25a1Q99MQ5 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC26.74■■□□□ 1.87
Col25a1Q99MQ5 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Col25a1Q99MQ5 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Col25a1Q99MQ5 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
Col25a1Q99MQ5 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
Col25a1Q99MQ5 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Col25a1Q99MQ5 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
Col25a1Q99MQ5 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Col25a1Q99MQ5 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC26.63■■□□□ 1.85
Col25a1Q99MQ5 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Col25a1Q99MQ5 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Col25a1Q99MQ5 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Col25a1Q99MQ5 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
Col25a1Q99MQ5 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Col25a1Q99MQ5 Gm11599-201ENSMUST00000118720 878 ntBASIC26.61■■□□□ 1.85
Col25a1Q99MQ5 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
Col25a1Q99MQ5 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC26.6■■□□□ 1.85
Col25a1Q99MQ5 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Col25a1Q99MQ5 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Col25a1Q99MQ5 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Col25a1Q99MQ5 Gm43863-201ENSMUST00000203822 1192 ntBASIC26.55■■□□□ 1.84
Col25a1Q99MQ5 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Col25a1Q99MQ5 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Col25a1Q99MQ5 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC26.51■■□□□ 1.83
Col25a1Q99MQ5 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Col25a1Q99MQ5 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC26.49■■□□□ 1.83
Col25a1Q99MQ5 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Col25a1Q99MQ5 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC26.47■■□□□ 1.83
Col25a1Q99MQ5 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Col25a1Q99MQ5 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Col25a1Q99MQ5 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC26.45■■□□□ 1.82
Col25a1Q99MQ5 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.82
Col25a1Q99MQ5 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Col25a1Q99MQ5 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC26.44■■□□□ 1.82
Col25a1Q99MQ5 Nkain2-201ENSMUST00000092602 558 ntBASIC26.44■■□□□ 1.82
Col25a1Q99MQ5 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC26.43■■□□□ 1.82
Col25a1Q99MQ5 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
Col25a1Q99MQ5 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
Col25a1Q99MQ5 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
Col25a1Q99MQ5 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Col25a1Q99MQ5 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Col25a1Q99MQ5 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC26.4■■□□□ 1.82
Col25a1Q99MQ5 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
Col25a1Q99MQ5 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Col25a1Q99MQ5 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC26.39■■□□□ 1.82
Col25a1Q99MQ5 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC26.39■■□□□ 1.81
Col25a1Q99MQ5 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Col25a1Q99MQ5 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
Col25a1Q99MQ5 Mipep-204ENSMUST00000225043 1548 ntBASIC26.36■■□□□ 1.81
Col25a1Q99MQ5 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Col25a1Q99MQ5 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Col25a1Q99MQ5 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Col25a1Q99MQ5 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Col25a1Q99MQ5 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC26.34■■□□□ 1.81
Col25a1Q99MQ5 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Col25a1Q99MQ5 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC26.34■■□□□ 1.81
Col25a1Q99MQ5 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Col25a1Q99MQ5 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Col25a1Q99MQ5 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Col25a1Q99MQ5 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
Col25a1Q99MQ5 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Col25a1Q99MQ5 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Col25a1Q99MQ5 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Col25a1Q99MQ5 Gm22567-201ENSMUST00000175542 342 ntBASIC26.29■■□□□ 1.8
Col25a1Q99MQ5 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
Col25a1Q99MQ5 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Col25a1Q99MQ5 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Col25a1Q99MQ5 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Col25a1Q99MQ5 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms