Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Ushbp1Q8R370 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Ushbp1Q8R370 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
Ushbp1Q8R370 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC28.5■■■□□ 2.15
Ushbp1Q8R370 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC28.5■■■□□ 2.15
Ushbp1Q8R370 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Ushbp1Q8R370 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Ushbp1Q8R370 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC28.49■■■□□ 2.15
Ushbp1Q8R370 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC28.49■■■□□ 2.15
Ushbp1Q8R370 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC28.48■■■□□ 2.15
Ushbp1Q8R370 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC28.48■■■□□ 2.15
Ushbp1Q8R370 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC28.48■■■□□ 2.15
Ushbp1Q8R370 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC28.47■■■□□ 2.15
Ushbp1Q8R370 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
Ushbp1Q8R370 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC28.45■■■□□ 2.14
Ushbp1Q8R370 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Ushbp1Q8R370 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC28.4■■■□□ 2.14
Ushbp1Q8R370 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Ushbp1Q8R370 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
Ushbp1Q8R370 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
Ushbp1Q8R370 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ushbp1Q8R370 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC28.37■■■□□ 2.13
Ushbp1Q8R370 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Ushbp1Q8R370 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC28.36■■■□□ 2.13
Ushbp1Q8R370 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC28.35■■■□□ 2.13
Ushbp1Q8R370 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ushbp1Q8R370 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC28.35■■■□□ 2.13
Ushbp1Q8R370 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ushbp1Q8R370 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Ushbp1Q8R370 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
Ushbp1Q8R370 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Ushbp1Q8R370 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC28.33■■■□□ 2.13
Ushbp1Q8R370 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ushbp1Q8R370 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ushbp1Q8R370 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Ushbp1Q8R370 Gm45855-201ENSMUST00000212546 880 ntBASIC28.32■■■□□ 2.12
Ushbp1Q8R370 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Ushbp1Q8R370 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
Ushbp1Q8R370 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC28.3■■■□□ 2.12
Ushbp1Q8R370 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC28.29■■■□□ 2.12
Ushbp1Q8R370 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC28.28■■■□□ 2.12
Ushbp1Q8R370 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ushbp1Q8R370 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
Ushbp1Q8R370 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
Ushbp1Q8R370 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ushbp1Q8R370 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Ushbp1Q8R370 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Ushbp1Q8R370 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Ushbp1Q8R370 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Ushbp1Q8R370 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ushbp1Q8R370 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
Ushbp1Q8R370 Zxda-201ENSMUST00000117281 2621 ntBASIC28.17■■■□□ 2.1
Ushbp1Q8R370 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC28.16■■■□□ 2.1
Ushbp1Q8R370 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
Ushbp1Q8R370 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
Ushbp1Q8R370 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
Ushbp1Q8R370 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.09
Ushbp1Q8R370 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Ushbp1Q8R370 Gm6345-201ENSMUST00000180378 1691 ntBASIC28.12■■■□□ 2.09
Ushbp1Q8R370 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Ushbp1Q8R370 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Ushbp1Q8R370 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.09
Ushbp1Q8R370 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC28.11■■■□□ 2.09
Ushbp1Q8R370 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
Ushbp1Q8R370 Gm9905-201ENSMUST00000065740 1845 ntBASIC28.09■■■□□ 2.09
Ushbp1Q8R370 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
Ushbp1Q8R370 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ushbp1Q8R370 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ushbp1Q8R370 Gm30346-201ENSMUST00000218641 1699 ntBASIC28.09■■■□□ 2.09
Ushbp1Q8R370 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ushbp1Q8R370 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Ushbp1Q8R370 Gm6206-201ENSMUST00000133472 2199 ntBASIC28.06■■■□□ 2.08
Ushbp1Q8R370 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Ushbp1Q8R370 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Ushbp1Q8R370 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
Ushbp1Q8R370 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
Ushbp1Q8R370 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC28.05■■■□□ 2.08
Ushbp1Q8R370 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Ushbp1Q8R370 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC28.04■■■□□ 2.08
Ushbp1Q8R370 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC28.03■■■□□ 2.08
Ushbp1Q8R370 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Ushbp1Q8R370 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC28.02■■■□□ 2.08
Ushbp1Q8R370 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Ushbp1Q8R370 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC28.01■■■□□ 2.07
Ushbp1Q8R370 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC28.01■■■□□ 2.07
Ushbp1Q8R370 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Ushbp1Q8R370 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC28■■■□□ 2.07
Ushbp1Q8R370 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC28■■■□□ 2.07
Ushbp1Q8R370 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Ushbp1Q8R370 Gm9397-201ENSMUST00000200125 605 ntBASIC28■■■□□ 2.07
Ushbp1Q8R370 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC28■■■□□ 2.07
Ushbp1Q8R370 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC27.99■■■□□ 2.07
Ushbp1Q8R370 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC27.99■■■□□ 2.07
Ushbp1Q8R370 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
Ushbp1Q8R370 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Ushbp1Q8R370 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Ushbp1Q8R370 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Ushbp1Q8R370 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
Ushbp1Q8R370 Gm43445-201ENSMUST00000198564 2091 ntBASIC27.98■■■□□ 2.07
Ushbp1Q8R370 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms