Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Col11a1Q61245 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC30.07■■■□□ 2.4
Col11a1Q61245 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Col11a1Q61245 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC30.03■■■□□ 2.4
Col11a1Q61245 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC30.03■■■□□ 2.4
Col11a1Q61245 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC30.01■■■□□ 2.39
Col11a1Q61245 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
Col11a1Q61245 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC30.01■■■□□ 2.39
Col11a1Q61245 Gm43863-201ENSMUST00000203822 1192 ntBASIC29.99■■■□□ 2.39
Col11a1Q61245 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC29.99■■■□□ 2.39
Col11a1Q61245 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Col11a1Q61245 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Col11a1Q61245 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC29.96■■■□□ 2.39
Col11a1Q61245 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
Col11a1Q61245 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
Col11a1Q61245 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Col11a1Q61245 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Col11a1Q61245 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
Col11a1Q61245 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Col11a1Q61245 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
Col11a1Q61245 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Col11a1Q61245 AC157572.2-201ENSMUST00000226970 908 ntBASIC29.89■■■□□ 2.38
Col11a1Q61245 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
Col11a1Q61245 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC29.87■■■□□ 2.37
Col11a1Q61245 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC29.85■■■□□ 2.37
Col11a1Q61245 Gm42809-201ENSMUST00000198429 1138 ntBASIC29.85■■■□□ 2.37
Col11a1Q61245 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Col11a1Q61245 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Col11a1Q61245 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
Col11a1Q61245 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC29.8■■■□□ 2.36
Col11a1Q61245 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC29.78■■■□□ 2.36
Col11a1Q61245 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
Col11a1Q61245 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Col11a1Q61245 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Col11a1Q61245 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC29.74■■■□□ 2.35
Col11a1Q61245 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Col11a1Q61245 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
Col11a1Q61245 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC29.71■■■□□ 2.35
Col11a1Q61245 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC29.71■■■□□ 2.35
Col11a1Q61245 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
Col11a1Q61245 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC29.68■■■□□ 2.34
Col11a1Q61245 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Col11a1Q61245 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Col11a1Q61245 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC29.65■■■□□ 2.34
Col11a1Q61245 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC29.64■■■□□ 2.33
Col11a1Q61245 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Col11a1Q61245 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
Col11a1Q61245 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC29.6■■■□□ 2.33
Col11a1Q61245 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Col11a1Q61245 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
Col11a1Q61245 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC29.59■■■□□ 2.33
Col11a1Q61245 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
Col11a1Q61245 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
Col11a1Q61245 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC29.55■■■□□ 2.32
Col11a1Q61245 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC29.54■■■□□ 2.32
Col11a1Q61245 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC29.54■■■□□ 2.32
Col11a1Q61245 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Col11a1Q61245 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC29.52■■■□□ 2.32
Col11a1Q61245 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Col11a1Q61245 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC29.51■■■□□ 2.31
Col11a1Q61245 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Col11a1Q61245 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC29.49■■■□□ 2.31
Col11a1Q61245 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
Col11a1Q61245 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
Col11a1Q61245 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC29.47■■■□□ 2.31
Col11a1Q61245 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC29.47■■■□□ 2.31
Col11a1Q61245 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
Col11a1Q61245 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
Col11a1Q61245 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC29.45■■■□□ 2.31
Col11a1Q61245 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
Col11a1Q61245 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC29.45■■■□□ 2.31
Col11a1Q61245 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC29.44■■■□□ 2.3
Col11a1Q61245 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC29.44■■■□□ 2.3
Col11a1Q61245 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC29.43■■■□□ 2.3
Col11a1Q61245 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC29.41■■■□□ 2.3
Col11a1Q61245 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC29.41■■■□□ 2.3
Col11a1Q61245 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
Col11a1Q61245 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC29.39■■■□□ 2.3
Col11a1Q61245 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC29.39■■■□□ 2.3
Col11a1Q61245 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Col11a1Q61245 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC29.39■■■□□ 2.29
Col11a1Q61245 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
Col11a1Q61245 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC29.39■■■□□ 2.29
Col11a1Q61245 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
Col11a1Q61245 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC29.36■■■□□ 2.29
Col11a1Q61245 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC29.36■■■□□ 2.29
Col11a1Q61245 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC29.36■■■□□ 2.29
Col11a1Q61245 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Col11a1Q61245 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC29.35■■■□□ 2.29
Col11a1Q61245 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
Col11a1Q61245 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
Col11a1Q61245 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Col11a1Q61245 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Col11a1Q61245 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
Col11a1Q61245 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
Col11a1Q61245 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC29.31■■■□□ 2.28
Col11a1Q61245 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC29.3■■■□□ 2.28
Col11a1Q61245 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Col11a1Q61245 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
Col11a1Q61245 Nkain2-201ENSMUST00000092602 558 ntBASIC29.29■■■□□ 2.28
Retrieved 100 of 76,532 protein–RNA pairs in 14.6 ms