Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trav6d-4Q5R1I0 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Trav6d-4Q5R1I0 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Trav6d-4Q5R1I0 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Trav6d-4Q5R1I0 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trav6d-4Q5R1I0 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trav6d-4Q5R1I0 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Trav6d-4Q5R1I0 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Trav6d-4Q5R1I0 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Trav6d-4Q5R1I0 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trav6d-4Q5R1I0 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trav6d-4Q5R1I0 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Trav6d-4Q5R1I0 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Trav6d-4Q5R1I0 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav6d-4Q5R1I0 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Trav6d-4Q5R1I0 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Trav6d-4Q5R1I0 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trav6d-4Q5R1I0 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trav6d-4Q5R1I0 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trav6d-4Q5R1I0 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trav6d-4Q5R1I0 Gm45855-201ENSMUST00000212546 880 ntBASIC21.41■■□□□ 1.02
Trav6d-4Q5R1I0 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trav6d-4Q5R1I0 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trav6d-4Q5R1I0 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Trav6d-4Q5R1I0 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.36■■□□□ 1.01
Trav6d-4Q5R1I0 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC21.36■■□□□ 1.01
Trav6d-4Q5R1I0 Gm9397-201ENSMUST00000200125 605 ntBASIC21.36■■□□□ 1.01
Trav6d-4Q5R1I0 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC21.36■■□□□ 1.01
Trav6d-4Q5R1I0 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC21.36■■□□□ 1.01
Trav6d-4Q5R1I0 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav6d-4Q5R1I0 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav6d-4Q5R1I0 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav6d-4Q5R1I0 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav6d-4Q5R1I0 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Trav6d-4Q5R1I0 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav6d-4Q5R1I0 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trav6d-4Q5R1I0 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav6d-4Q5R1I0 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC21.31■■□□□ 1
Trav6d-4Q5R1I0 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC21.31■■□□□ 1
Trav6d-4Q5R1I0 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trav6d-4Q5R1I0 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trav6d-4Q5R1I0 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Trav6d-4Q5R1I0 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Trav6d-4Q5R1I0 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC21.29■■□□□ 1
Trav6d-4Q5R1I0 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Trav6d-4Q5R1I0 Gm30346-201ENSMUST00000218641 1699 ntBASIC21.28■■□□□ 1
Trav6d-4Q5R1I0 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav6d-4Q5R1I0 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC21.26■□□□□ 0.99
Trav6d-4Q5R1I0 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
Trav6d-4Q5R1I0 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trav6d-4Q5R1I0 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trav6d-4Q5R1I0 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trav6d-4Q5R1I0 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trav6d-4Q5R1I0 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Trav6d-4Q5R1I0 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Trav6d-4Q5R1I0 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC21.2■□□□□ 0.98
Trav6d-4Q5R1I0 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trav6d-4Q5R1I0 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav6d-4Q5R1I0 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC21.19■□□□□ 0.98
Trav6d-4Q5R1I0 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC21.19■□□□□ 0.98
Trav6d-4Q5R1I0 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
Trav6d-4Q5R1I0 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trav6d-4Q5R1I0 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Trav6d-4Q5R1I0 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Trav6d-4Q5R1I0 Gm24970-201ENSMUST00000175582 82 ntBASIC21.18■□□□□ 0.98
Trav6d-4Q5R1I0 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trav6d-4Q5R1I0 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav6d-4Q5R1I0 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
Trav6d-4Q5R1I0 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav6d-4Q5R1I0 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav6d-4Q5R1I0 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav6d-4Q5R1I0 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav6d-4Q5R1I0 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav6d-4Q5R1I0 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav6d-4Q5R1I0 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trav6d-4Q5R1I0 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Trav6d-4Q5R1I0 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC21.15■□□□□ 0.98
Trav6d-4Q5R1I0 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav6d-4Q5R1I0 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC21.15■□□□□ 0.98
Trav6d-4Q5R1I0 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trav6d-4Q5R1I0 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trav6d-4Q5R1I0 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trav6d-4Q5R1I0 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trav6d-4Q5R1I0 Gm43863-201ENSMUST00000203822 1192 ntBASIC21.11■□□□□ 0.97
Trav6d-4Q5R1I0 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Trav6d-4Q5R1I0 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav6d-4Q5R1I0 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Trav6d-4Q5R1I0 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav6d-4Q5R1I0 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Trav6d-4Q5R1I0 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav6d-4Q5R1I0 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Trav6d-4Q5R1I0 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC21.08■□□□□ 0.97
Trav6d-4Q5R1I0 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Trav6d-4Q5R1I0 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trav6d-4Q5R1I0 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC21.06■□□□□ 0.96
Trav6d-4Q5R1I0 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trav6d-4Q5R1I0 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trav6d-4Q5R1I0 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC21.04■□□□□ 0.96
Trav6d-4Q5R1I0 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC21.04■□□□□ 0.96
Trav6d-4Q5R1I0 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms