Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Gm25239-201ENSMUST00000174915 86 ntBASIC31,98■■■□□ 2,71
Trav6d-4Q5R1I0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC29,5■■■□□ 2,31
Trav6d-4Q5R1I0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC29,14■■■□□ 2,26
Trav6d-4Q5R1I0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC28,31■■■□□ 2,12
Trav6d-4Q5R1I0 Gm15042-201ENSMUST00000120212 883 ntBASIC28,11■■■□□ 2,09
Trav6d-4Q5R1I0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC27,74■■■□□ 2,03
Trav6d-4Q5R1I0 Gm24109-201ENSMUST00000175489 103 ntBASIC27,62■■■□□ 2,01
Trav6d-4Q5R1I0 Gm15045-201ENSMUST00000117359 883 ntBASIC27,5■■□□□ 1,99
Trav6d-4Q5R1I0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC27,4■■□□□ 1,98
Trav6d-4Q5R1I0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC27,24■■□□□ 1,95
Trav6d-4Q5R1I0 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC26,99■■□□□ 1,91
Trav6d-4Q5R1I0 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC26,84■■□□□ 1,89
Trav6d-4Q5R1I0 Gm23366-201ENSMUST00000175022 89 ntBASIC26,75■■□□□ 1,87
Trav6d-4Q5R1I0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC26,66■■□□□ 1,86
Trav6d-4Q5R1I0 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC26,58■■□□□ 1,85
Trav6d-4Q5R1I0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC26,37■■□□□ 1,81
Trav6d-4Q5R1I0 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC26,22■■□□□ 1,79
Trav6d-4Q5R1I0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26,16■■□□□ 1,78
Trav6d-4Q5R1I0 Psd-208ENSMUST00000224556 2034 ntBASIC26,12■■□□□ 1,77
Trav6d-4Q5R1I0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC26,07■■□□□ 1,76
Trav6d-4Q5R1I0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC26,07■■□□□ 1,76
Trav6d-4Q5R1I0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC26,02■■□□□ 1,76
Trav6d-4Q5R1I0 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC25,95■■□□□ 1,74
Trav6d-4Q5R1I0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25,9■■□□□ 1,74
Trav6d-4Q5R1I0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC25,89■■□□□ 1,73
Trav6d-4Q5R1I0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC25,85■■□□□ 1,73
Trav6d-4Q5R1I0 AC153911.1-202ENSMUST00000218534 1034 ntBASIC25,82■■□□□ 1,72
Trav6d-4Q5R1I0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC25,75■■□□□ 1,71
Trav6d-4Q5R1I0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC25,7■■□□□ 1,7
Trav6d-4Q5R1I0 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC25,57■■□□□ 1,68
Trav6d-4Q5R1I0 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC25,42■■□□□ 1,66
Trav6d-4Q5R1I0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC25,4■■□□□ 1,66
Trav6d-4Q5R1I0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC25,37■■□□□ 1,65
Trav6d-4Q5R1I0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC25,34■■□□□ 1,65
Trav6d-4Q5R1I0 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC25,31■■□□□ 1,64
Trav6d-4Q5R1I0 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC25,29■■□□□ 1,64
Trav6d-4Q5R1I0 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC25,25■■□□□ 1,63
Trav6d-4Q5R1I0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC25,19■■□□□ 1,62
Trav6d-4Q5R1I0 Gm25238-201ENSMUST00000174914 89 ntBASIC25,19■■□□□ 1,62
Trav6d-4Q5R1I0 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC25,18■■□□□ 1,62
Trav6d-4Q5R1I0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25,1■■□□□ 1,61
Trav6d-4Q5R1I0 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC24,92■■□□□ 1,58
Trav6d-4Q5R1I0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC24,91■■□□□ 1,58
Trav6d-4Q5R1I0 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC24,86■■□□□ 1,57
Trav6d-4Q5R1I0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24,82■■□□□ 1,56
Trav6d-4Q5R1I0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC24,82■■□□□ 1,56
Trav6d-4Q5R1I0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC24,75■■□□□ 1,55
Trav6d-4Q5R1I0 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC24,71■■□□□ 1,55
Trav6d-4Q5R1I0 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC24,7■■□□□ 1,54
Trav6d-4Q5R1I0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC24,68■■□□□ 1,54
Trav6d-4Q5R1I0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC24,68■■□□□ 1,54
Trav6d-4Q5R1I0 Gm27325-201ENSMUST00000175467 74 ntBASIC24,67■■□□□ 1,54
Trav6d-4Q5R1I0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24,57■■□□□ 1,52
Trav6d-4Q5R1I0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC24,5■■□□□ 1,51
Trav6d-4Q5R1I0 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC24,49■■□□□ 1,51
Trav6d-4Q5R1I0 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC24,45■■□□□ 1,5
Trav6d-4Q5R1I0 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC24,45■■□□□ 1,5
Trav6d-4Q5R1I0 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24,42■■□□□ 1,5
Trav6d-4Q5R1I0 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC24,4■■□□□ 1,5
Trav6d-4Q5R1I0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC24,38■■□□□ 1,49
Trav6d-4Q5R1I0 Gm10524-201ENSMUST00000181931 1893 ntBASIC24,36■■□□□ 1,49
Trav6d-4Q5R1I0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24,35■■□□□ 1,49
Trav6d-4Q5R1I0 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC24,34■■□□□ 1,49
Trav6d-4Q5R1I0 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24,33■■□□□ 1,49
Trav6d-4Q5R1I0 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC24,31■■□□□ 1,48
Trav6d-4Q5R1I0 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24,29■■□□□ 1,48
Trav6d-4Q5R1I0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC24,26■■□□□ 1,47
Trav6d-4Q5R1I0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC24,26■■□□□ 1,47
Trav6d-4Q5R1I0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC24,25■■□□□ 1,47
Trav6d-4Q5R1I0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC24,24■■□□□ 1,47
Trav6d-4Q5R1I0 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC24,23■■□□□ 1,47
Trav6d-4Q5R1I0 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC24,22■■□□□ 1,47
Trav6d-4Q5R1I0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC24,13■■□□□ 1,45
Trav6d-4Q5R1I0 Rab21-202ENSMUST00000218831 843 ntBASIC24,12■■□□□ 1,45
Trav6d-4Q5R1I0 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC24,1■■□□□ 1,45
Trav6d-4Q5R1I0 Gm25262-201ENSMUST00000174934 133 ntBASIC24,07■■□□□ 1,44
Trav6d-4Q5R1I0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC24,06■■□□□ 1,44
Trav6d-4Q5R1I0 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC24,03■■□□□ 1,44
Trav6d-4Q5R1I0 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24,02■■□□□ 1,44
Trav6d-4Q5R1I0 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1,43
Trav6d-4Q5R1I0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC23,98■■□□□ 1,43
Trav6d-4Q5R1I0 Gm42596-201ENSMUST00000196305 1958 ntBASIC23,97■■□□□ 1,43
Trav6d-4Q5R1I0 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC23,9■■□□□ 1,42
Trav6d-4Q5R1I0 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC23,86■■□□□ 1,41
Trav6d-4Q5R1I0 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC23,84■■□□□ 1,41
Trav6d-4Q5R1I0 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23,83■■□□□ 1,4
Trav6d-4Q5R1I0 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC23,8■■□□□ 1,4
Trav6d-4Q5R1I0 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC23,77■■□□□ 1,4
Trav6d-4Q5R1I0 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC23,75■■□□□ 1,39
Trav6d-4Q5R1I0 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC23,73■■□□□ 1,39
Trav6d-4Q5R1I0 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC23,72■■□□□ 1,39
Trav6d-4Q5R1I0 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC23,65■■□□□ 1,38
Trav6d-4Q5R1I0 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC23,64■■□□□ 1,37
Trav6d-4Q5R1I0 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC23,63■■□□□ 1,37
Trav6d-4Q5R1I0 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC23,62■■□□□ 1,37
Trav6d-4Q5R1I0 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC23,6■■□□□ 1,37
Trav6d-4Q5R1I0 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC23,57■■□□□ 1,36
Trav6d-4Q5R1I0 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC23,57■■□□□ 1,36
Trav6d-4Q5R1I0 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC23,56■■□□□ 1,36
Trav6d-4Q5R1I0 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC23,56■■□□□ 1,36
Retrieved 100 of 76,532 protein–RNA pairs in 7,7 ms