Protein–RNA interactions for Protein: Q3TR08

Fndc4, Fibronectin type III domain-containing protein 4, mousemouse

Predictions only

Length 231 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Fndc4Q3TR08 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Fndc4Q3TR08 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Fndc4Q3TR08 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Fndc4Q3TR08 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Fndc4Q3TR08 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Fndc4Q3TR08 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Fndc4Q3TR08 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Fndc4Q3TR08 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Fndc4Q3TR08 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Fndc4Q3TR08 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Fndc4Q3TR08 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Fndc4Q3TR08 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Fndc4Q3TR08 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
Fndc4Q3TR08 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Fndc4Q3TR08 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Fndc4Q3TR08 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Fndc4Q3TR08 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Fndc4Q3TR08 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Fndc4Q3TR08 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Fndc4Q3TR08 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Fndc4Q3TR08 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Fndc4Q3TR08 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC21.12■□□□□ 0.97
Fndc4Q3TR08 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Fndc4Q3TR08 Amer2-203ENSMUST00000225247 2662 ntBASIC21.12■□□□□ 0.97
Fndc4Q3TR08 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Fndc4Q3TR08 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Fndc4Q3TR08 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Fndc4Q3TR08 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Fndc4Q3TR08 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Fndc4Q3TR08 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Fndc4Q3TR08 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Fndc4Q3TR08 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Fndc4Q3TR08 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Fndc4Q3TR08 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Fndc4Q3TR08 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC21.06■□□□□ 0.96
Fndc4Q3TR08 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Fndc4Q3TR08 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Fndc4Q3TR08 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Fndc4Q3TR08 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Fndc4Q3TR08 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Fndc4Q3TR08 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC21.02■□□□□ 0.96
Fndc4Q3TR08 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Fndc4Q3TR08 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC21.02■□□□□ 0.95
Fndc4Q3TR08 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Fndc4Q3TR08 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Fndc4Q3TR08 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
Fndc4Q3TR08 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Fndc4Q3TR08 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Fndc4Q3TR08 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC21■□□□□ 0.95
Fndc4Q3TR08 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Fndc4Q3TR08 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Fndc4Q3TR08 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Fndc4Q3TR08 Gm24804-201ENSMUST00000174982 85 ntBASIC20.98■□□□□ 0.95
Fndc4Q3TR08 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Fndc4Q3TR08 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Fndc4Q3TR08 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC20.97■□□□□ 0.95
Fndc4Q3TR08 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Fndc4Q3TR08 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC20.97■□□□□ 0.95
Fndc4Q3TR08 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Fndc4Q3TR08 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Fndc4Q3TR08 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Fndc4Q3TR08 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Fndc4Q3TR08 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Fndc4Q3TR08 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Fndc4Q3TR08 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Fndc4Q3TR08 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Fndc4Q3TR08 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Fndc4Q3TR08 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Fndc4Q3TR08 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
Fndc4Q3TR08 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Fndc4Q3TR08 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Fndc4Q3TR08 Fezf2-202ENSMUST00000224023 1917 ntBASIC20.92■□□□□ 0.94
Fndc4Q3TR08 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Fndc4Q3TR08 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Fndc4Q3TR08 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Fndc4Q3TR08 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Fndc4Q3TR08 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Fndc4Q3TR08 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Fndc4Q3TR08 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Fndc4Q3TR08 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Fndc4Q3TR08 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Fndc4Q3TR08 Peli2-204ENSMUST00000226513 1320 ntBASIC20.88■□□□□ 0.93
Fndc4Q3TR08 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Fndc4Q3TR08 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC20.86■□□□□ 0.93
Fndc4Q3TR08 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Fndc4Q3TR08 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Fndc4Q3TR08 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Fndc4Q3TR08 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Fndc4Q3TR08 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC20.84■□□□□ 0.93
Fndc4Q3TR08 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Fndc4Q3TR08 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Fndc4Q3TR08 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Fndc4Q3TR08 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Fndc4Q3TR08 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Fndc4Q3TR08 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Fndc4Q3TR08 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
Fndc4Q3TR08 AC153890.1-201ENSMUST00000220021 2469 ntBASIC20.82■□□□□ 0.92
Fndc4Q3TR08 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Fndc4Q3TR08 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Fndc4Q3TR08 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms