Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Hmgb3O54879 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Hmgb3O54879 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Hmgb3O54879 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Hmgb3O54879 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Hmgb3O54879 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Hmgb3O54879 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Hmgb3O54879 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.78■□□□□ 0.92
Hmgb3O54879 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Hmgb3O54879 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Hmgb3O54879 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.78■□□□□ 0.92
Hmgb3O54879 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC20.77■□□□□ 0.92
Hmgb3O54879 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC20.77■□□□□ 0.92
Hmgb3O54879 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Hmgb3O54879 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Hmgb3O54879 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Hmgb3O54879 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Hmgb3O54879 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Hmgb3O54879 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Hmgb3O54879 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Hmgb3O54879 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Hmgb3O54879 Amer2-203ENSMUST00000225247 2662 ntBASIC20.71■□□□□ 0.91
Hmgb3O54879 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC20.7■□□□□ 0.9
Hmgb3O54879 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb3O54879 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb3O54879 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb3O54879 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb3O54879 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb3O54879 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Hmgb3O54879 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb3O54879 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb3O54879 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb3O54879 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb3O54879 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hmgb3O54879 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hmgb3O54879 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Hmgb3O54879 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Hmgb3O54879 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC20.65■□□□□ 0.9
Hmgb3O54879 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb3O54879 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Hmgb3O54879 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
Hmgb3O54879 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Hmgb3O54879 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Hmgb3O54879 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb3O54879 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb3O54879 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.63■□□□□ 0.89
Hmgb3O54879 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb3O54879 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb3O54879 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb3O54879 Rab21-202ENSMUST00000218831 843 ntBASIC20.61■□□□□ 0.89
Hmgb3O54879 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb3O54879 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb3O54879 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb3O54879 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb3O54879 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Hmgb3O54879 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Hmgb3O54879 Mipep-204ENSMUST00000225043 1548 ntBASIC20.58■□□□□ 0.88
Hmgb3O54879 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb3O54879 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.57■□□□□ 0.88
Hmgb3O54879 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb3O54879 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb3O54879 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC20.56■□□□□ 0.88
Hmgb3O54879 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb3O54879 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb3O54879 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb3O54879 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb3O54879 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb3O54879 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb3O54879 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
Hmgb3O54879 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb3O54879 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb3O54879 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Hmgb3O54879 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Hmgb3O54879 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Hmgb3O54879 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hmgb3O54879 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC20.49■□□□□ 0.87
Hmgb3O54879 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb3O54879 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Hmgb3O54879 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Hmgb3O54879 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC20.48■□□□□ 0.87
Hmgb3O54879 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
Hmgb3O54879 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Hmgb3O54879 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Hmgb3O54879 AL845457.1-201ENSMUST00000197244 68 ntBASIC20.46■□□□□ 0.87
Hmgb3O54879 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Hmgb3O54879 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb3O54879 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb3O54879 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb3O54879 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb3O54879 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
Hmgb3O54879 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.43■□□□□ 0.86
Hmgb3O54879 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC20.43■□□□□ 0.86
Hmgb3O54879 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC20.42■□□□□ 0.86
Hmgb3O54879 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Hmgb3O54879 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Hmgb3O54879 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Hmgb3O54879 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb3O54879 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb3O54879 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb3O54879 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms