Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.83■■□□□ 1.09
HMGB4Q8WW32 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HMGB4Q8WW32 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HMGB4Q8WW32 AC009237.3-201ENST00000393279 1427 ntBASIC21.83■■□□□ 1.09
HMGB4Q8WW32 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.83■■□□□ 1.09
HMGB4Q8WW32 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
HMGB4Q8WW32 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
HMGB4Q8WW32 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.83■■□□□ 1.09
HMGB4Q8WW32 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
HMGB4Q8WW32 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HMGB4Q8WW32 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HMGB4Q8WW32 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGB4Q8WW32 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.82■■□□□ 1.08
HMGB4Q8WW32 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.82■■□□□ 1.08
HMGB4Q8WW32 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
HMGB4Q8WW32 GPX1P1-201ENST00000388829 606 ntBASIC21.82■■□□□ 1.08
HMGB4Q8WW32 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.82■■□□□ 1.08
HMGB4Q8WW32 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGB4Q8WW32 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.82■■□□□ 1.08
HMGB4Q8WW32 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
HMGB4Q8WW32 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.82■■□□□ 1.08
HMGB4Q8WW32 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.82■■□□□ 1.08
HMGB4Q8WW32 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.82■■□□□ 1.08
HMGB4Q8WW32 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.81■■□□□ 1.08
HMGB4Q8WW32 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB4Q8WW32 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB4Q8WW32 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
HMGB4Q8WW32 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB4Q8WW32 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.81■■□□□ 1.08
HMGB4Q8WW32 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB4Q8WW32 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB4Q8WW32 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.81■■□□□ 1.08
HMGB4Q8WW32 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB4Q8WW32 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB4Q8WW32 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB4Q8WW32 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB4Q8WW32 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGB4Q8WW32 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB4Q8WW32 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB4Q8WW32 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB4Q8WW32 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
HMGB4Q8WW32 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB4Q8WW32 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB4Q8WW32 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.8■■□□□ 1.08
HMGB4Q8WW32 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.8■■□□□ 1.08
HMGB4Q8WW32 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB4Q8WW32 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
HMGB4Q8WW32 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.8■■□□□ 1.08
HMGB4Q8WW32 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB4Q8WW32 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB4Q8WW32 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB4Q8WW32 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB4Q8WW32 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB4Q8WW32 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
HMGB4Q8WW32 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB4Q8WW32 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.79■■□□□ 1.08
HMGB4Q8WW32 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.79■■□□□ 1.08
HMGB4Q8WW32 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB4Q8WW32 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
HMGB4Q8WW32 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
HMGB4Q8WW32 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB4Q8WW32 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
HMGB4Q8WW32 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB4Q8WW32 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
HMGB4Q8WW32 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB4Q8WW32 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.78■■□□□ 1.08
HMGB4Q8WW32 UBE2DNL-204ENST00000602536 740 ntBASIC21.78■■□□□ 1.08
HMGB4Q8WW32 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
HMGB4Q8WW32 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB4Q8WW32 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB4Q8WW32 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.77■■□□□ 1.08
HMGB4Q8WW32 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.77■■□□□ 1.08
HMGB4Q8WW32 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB4Q8WW32 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
HMGB4Q8WW32 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB4Q8WW32 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
HMGB4Q8WW32 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
HMGB4Q8WW32 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 ABHD17AP1-201ENST00000358206 933 ntBASIC21.76■■□□□ 1.07
HMGB4Q8WW32 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HMGB4Q8WW32 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB4Q8WW32 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB4Q8WW32 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB4Q8WW32 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.75■■□□□ 1.07
HMGB4Q8WW32 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
HMGB4Q8WW32 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB4Q8WW32 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms