Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMK1P53667 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.53■■□□□ 1.04
LIMK1P53667 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMK1P53667 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
LIMK1P53667 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
LIMK1P53667 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.52■■□□□ 1.04
LIMK1P53667 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIMK1P53667 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.52■■□□□ 1.04
LIMK1P53667 KRT18P29-201ENST00000397031 1267 ntBASIC21.52■■□□□ 1.04
LIMK1P53667 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.52■■□□□ 1.04
LIMK1P53667 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.52■■□□□ 1.04
LIMK1P53667 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LIMK1P53667 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIMK1P53667 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIMK1P53667 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
LIMK1P53667 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
LIMK1P53667 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.52■■□□□ 1.03
LIMK1P53667 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
LIMK1P53667 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.52■■□□□ 1.03
LIMK1P53667 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
LIMK1P53667 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMK1P53667 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LIMK1P53667 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
LIMK1P53667 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.51■■□□□ 1.03
LIMK1P53667 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LIMK1P53667 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.51■■□□□ 1.03
LIMK1P53667 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LIMK1P53667 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LIMK1P53667 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMK1P53667 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.51■■□□□ 1.03
LIMK1P53667 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.51■■□□□ 1.03
LIMK1P53667 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMK1P53667 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMK1P53667 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMK1P53667 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.51■■□□□ 1.03
LIMK1P53667 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LIMK1P53667 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIMK1P53667 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LIMK1P53667 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIMK1P53667 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIMK1P53667 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LIMK1P53667 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.5■■□□□ 1.03
LIMK1P53667 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.5■■□□□ 1.03
LIMK1P53667 AC068587.7-201ENST00000641602 218 ntBASIC21.5■■□□□ 1.03
LIMK1P53667 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LIMK1P53667 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.5■■□□□ 1.03
LIMK1P53667 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.49■■□□□ 1.03
LIMK1P53667 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LIMK1P53667 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LIMK1P53667 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.49■■□□□ 1.03
LIMK1P53667 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.49■■□□□ 1.03
LIMK1P53667 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
LIMK1P53667 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
LIMK1P53667 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.49■■□□□ 1.03
LIMK1P53667 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LIMK1P53667 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIMK1P53667 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIMK1P53667 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIMK1P53667 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIMK1P53667 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LIMK1P53667 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIMK1P53667 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC21.48■■□□□ 1.03
LIMK1P53667 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.48■■□□□ 1.03
LIMK1P53667 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIMK1P53667 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIMK1P53667 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.47■■□□□ 1.03
LIMK1P53667 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.47■■□□□ 1.03
LIMK1P53667 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LIMK1P53667 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LIMK1P53667 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LIMK1P53667 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LIMK1P53667 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.47■■□□□ 1.03
LIMK1P53667 AF201337.1-201ENST00000520239 748 ntBASIC21.47■■□□□ 1.03
LIMK1P53667 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.47■■□□□ 1.03
LIMK1P53667 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.47■■□□□ 1.03
LIMK1P53667 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.47■■□□□ 1.03
LIMK1P53667 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
LIMK1P53667 AP006294.2-201ENST00000641667 209 ntBASIC21.47■■□□□ 1.03
LIMK1P53667 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LIMK1P53667 LINC01124-201ENST00000409786 2117 ntBASIC21.47■■□□□ 1.03
LIMK1P53667 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LIMK1P53667 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LIMK1P53667 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
LIMK1P53667 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LIMK1P53667 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.46■■□□□ 1.03
LIMK1P53667 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LIMK1P53667 PRORSD1P-201ENST00000295112 541 ntBASIC21.46■■□□□ 1.03
LIMK1P53667 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LIMK1P53667 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.46■■□□□ 1.03
LIMK1P53667 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.46■■□□□ 1.03
LIMK1P53667 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.46■■□□□ 1.03
LIMK1P53667 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
LIMK1P53667 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
LIMK1P53667 AC133552.2-202ENST00000575694 574 ntBASIC21.46■■□□□ 1.03
LIMK1P53667 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.46■■□□□ 1.03
LIMK1P53667 SMUG1P1-201ENST00000590640 811 ntBASIC21.46■■□□□ 1.03
LIMK1P53667 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.46■■□□□ 1.03
LIMK1P53667 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
LIMK1P53667 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
LIMK1P53667 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms