Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DMBP28068 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DMBP28068 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DMBP28068 PEMT-206ENST00000435340 960 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DMBP28068 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DMBP28068 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC16.47■□□□□ 0.23
HLA-DMBP28068 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DMBP28068 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DMBP28068 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DMBP28068 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DMBP28068 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
HLA-DMBP28068 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DMBP28068 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DMBP28068 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DMBP28068 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
HLA-DMBP28068 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC16.46■□□□□ 0.23
HLA-DMBP28068 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HLA-DMBP28068 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HLA-DMBP28068 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DMBP28068 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HLA-DMBP28068 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DMBP28068 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC16.46■□□□□ 0.23
HLA-DMBP28068 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC16.46■□□□□ 0.23
HLA-DMBP28068 MIR3621-201ENST00000580529 85 ntBASIC16.46■□□□□ 0.23
HLA-DMBP28068 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HLA-DMBP28068 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
HLA-DMBP28068 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DMBP28068 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC16.46■□□□□ 0.23
HLA-DMBP28068 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
HLA-DMBP28068 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DMBP28068 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
HLA-DMBP28068 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
HLA-DMBP28068 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
HLA-DMBP28068 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
HLA-DMBP28068 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DMBP28068 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DMBP28068 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DMBP28068 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DMBP28068 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DMBP28068 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HLA-DMBP28068 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DMBP28068 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
HLA-DMBP28068 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
HLA-DMBP28068 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DMBP28068 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HLA-DMBP28068 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DMBP28068 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DMBP28068 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.45■□□□□ 0.22
HLA-DMBP28068 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DMBP28068 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
HLA-DMBP28068 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DMBP28068 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
HLA-DMBP28068 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DMBP28068 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DMBP28068 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
HLA-DMBP28068 AC006455.2-201ENST00000429931 906 ntBASIC16.44■□□□□ 0.22
HLA-DMBP28068 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC16.44■□□□□ 0.22
HLA-DMBP28068 AC131281.2-201ENST00000520478 145 ntBASIC16.44■□□□□ 0.22
HLA-DMBP28068 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC16.44■□□□□ 0.22
HLA-DMBP28068 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DMBP28068 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC16.44■□□□□ 0.22
HLA-DMBP28068 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
HLA-DMBP28068 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DMBP28068 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DMBP28068 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
HLA-DMBP28068 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC16.44■□□□□ 0.22
HLA-DMBP28068 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DMBP28068 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC16.44■□□□□ 0.22
HLA-DMBP28068 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HLA-DMBP28068 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC16.43■□□□□ 0.22
HLA-DMBP28068 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC16.43■□□□□ 0.22
HLA-DMBP28068 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC16.43■□□□□ 0.22
HLA-DMBP28068 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HLA-DMBP28068 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DMBP28068 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
HLA-DMBP28068 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DMBP28068 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC16.43■□□□□ 0.22
HLA-DMBP28068 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DMBP28068 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DMBP28068 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DMBP28068 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC16.43■□□□□ 0.22
HLA-DMBP28068 AL499627.2-201ENST00000606283 725 ntBASIC16.43■□□□□ 0.22
HLA-DMBP28068 CA15P2-201ENST00000611168 834 ntBASIC16.43■□□□□ 0.22
HLA-DMBP28068 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DMBP28068 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DMBP28068 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
HLA-DMBP28068 AC026310.3-201ENST00000625186 2373 ntBASIC16.43■□□□□ 0.22
HLA-DMBP28068 ME2-206ENST00000638410 2289 ntTSL 5 BASIC16.43■□□□□ 0.22
HLA-DMBP28068 ME2-210ENST00000639255 2262 ntTSL 5 BASIC16.43■□□□□ 0.22
HLA-DMBP28068 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DMBP28068 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HLA-DMBP28068 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC16.43■□□□□ 0.22
HLA-DMBP28068 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DMBP28068 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
HLA-DMBP28068 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DMBP28068 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DMBP28068 GTSE1-AS1-202ENST00000623117 1518 ntBASIC16.42■□□□□ 0.22
HLA-DMBP28068 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC16.42■□□□□ 0.22
HLA-DMBP28068 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC16.42■□□□□ 0.22
HLA-DMBP28068 AL136116.3-201ENST00000402907 1138 ntBASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms