Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VPS35Q96QK1 AC068473.5-201ENST00000616428 2072 ntBASIC21.57■■□□□ 1.04
VPS35Q96QK1 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.57■■□□□ 1.04
VPS35Q96QK1 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
VPS35Q96QK1 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS35Q96QK1 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS35Q96QK1 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS35Q96QK1 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
VPS35Q96QK1 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS35Q96QK1 AC079089.2-201ENST00000531211 1277 ntBASIC21.56■■□□□ 1.04
VPS35Q96QK1 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS35Q96QK1 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.56■■□□□ 1.04
VPS35Q96QK1 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS35Q96QK1 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.56■■□□□ 1.04
VPS35Q96QK1 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS35Q96QK1 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS35Q96QK1 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.55■■□□□ 1.04
VPS35Q96QK1 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS35Q96QK1 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS35Q96QK1 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS35Q96QK1 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS35Q96QK1 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS35Q96QK1 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS35Q96QK1 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
VPS35Q96QK1 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.55■■□□□ 1.04
VPS35Q96QK1 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
VPS35Q96QK1 AC127496.7-201ENST00000625110 1798 ntBASIC21.55■■□□□ 1.04
VPS35Q96QK1 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.55■■□□□ 1.04
VPS35Q96QK1 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
VPS35Q96QK1 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS35Q96QK1 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS35Q96QK1 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS35Q96QK1 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS35Q96QK1 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS35Q96QK1 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.55■■□□□ 1.04
VPS35Q96QK1 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
VPS35Q96QK1 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.54■■□□□ 1.04
VPS35Q96QK1 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS35Q96QK1 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
VPS35Q96QK1 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS35Q96QK1 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS35Q96QK1 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VPS35Q96QK1 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS35Q96QK1 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VPS35Q96QK1 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VPS35Q96QK1 AC137767.1-201ENST00000602918 1920 ntBASIC21.54■■□□□ 1.04
VPS35Q96QK1 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS35Q96QK1 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.54■■□□□ 1.04
VPS35Q96QK1 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.54■■□□□ 1.04
VPS35Q96QK1 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS35Q96QK1 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS35Q96QK1 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
VPS35Q96QK1 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VPS35Q96QK1 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS35Q96QK1 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
VPS35Q96QK1 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VPS35Q96QK1 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VPS35Q96QK1 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS35Q96QK1 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS35Q96QK1 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.52■■□□□ 1.04
VPS35Q96QK1 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.52■■□□□ 1.04
VPS35Q96QK1 AL354811.1-201ENST00000610286 706 ntBASIC21.52■■□□□ 1.04
VPS35Q96QK1 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.52■■□□□ 1.04
VPS35Q96QK1 AL358852.1-201ENST00000623174 1268 ntBASIC21.52■■□□□ 1.04
VPS35Q96QK1 AC105233.4-201ENST00000642045 216 ntBASIC21.52■■□□□ 1.04
VPS35Q96QK1 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.52■■□□□ 1.04
VPS35Q96QK1 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VPS35Q96QK1 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.52■■□□□ 1.04
VPS35Q96QK1 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VPS35Q96QK1 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS35Q96QK1 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
VPS35Q96QK1 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
VPS35Q96QK1 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.03
VPS35Q96QK1 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
VPS35Q96QK1 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
VPS35Q96QK1 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
VPS35Q96QK1 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS35Q96QK1 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS35Q96QK1 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
VPS35Q96QK1 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS35Q96QK1 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.51■■□□□ 1.03
VPS35Q96QK1 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS35Q96QK1 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS35Q96QK1 AC012414.1-201ENST00000556676 535 ntBASIC21.51■■□□□ 1.03
VPS35Q96QK1 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS35Q96QK1 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS35Q96QK1 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.51■■□□□ 1.03
VPS35Q96QK1 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS35Q96QK1 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS35Q96QK1 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS35Q96QK1 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
VPS35Q96QK1 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS35Q96QK1 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS35Q96QK1 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS35Q96QK1 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS35Q96QK1 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS35Q96QK1 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS35Q96QK1 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS35Q96QK1 SMUG1P1-201ENST00000590640 811 ntBASIC21.5■■□□□ 1.03
VPS35Q96QK1 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms