Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.72■□□□□ 0.59
USF3Q68DE3 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
USF3Q68DE3 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.72■□□□□ 0.59
USF3Q68DE3 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.72■□□□□ 0.59
USF3Q68DE3 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USF3Q68DE3 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.72■□□□□ 0.59
USF3Q68DE3 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.72■□□□□ 0.59
USF3Q68DE3 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USF3Q68DE3 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
USF3Q68DE3 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USF3Q68DE3 CDCA4P2-201ENST00000441182 718 ntBASIC18.71■□□□□ 0.59
USF3Q68DE3 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.71■□□□□ 0.59
USF3Q68DE3 AC004854.2-201ENST00000608450 1441 ntBASIC18.71■□□□□ 0.59
USF3Q68DE3 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USF3Q68DE3 AC079630.1-202ENST00000618127 1840 ntBASIC18.71■□□□□ 0.59
USF3Q68DE3 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC18.71■□□□□ 0.59
USF3Q68DE3 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USF3Q68DE3 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USF3Q68DE3 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.7■□□□□ 0.58
USF3Q68DE3 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
USF3Q68DE3 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.7■□□□□ 0.58
USF3Q68DE3 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USF3Q68DE3 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
USF3Q68DE3 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USF3Q68DE3 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.7■□□□□ 0.58
USF3Q68DE3 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.7■□□□□ 0.58
USF3Q68DE3 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USF3Q68DE3 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USF3Q68DE3 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.7■□□□□ 0.58
USF3Q68DE3 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
USF3Q68DE3 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
USF3Q68DE3 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USF3Q68DE3 AC004687.1-201ENST00000579003 1625 ntBASIC18.69■□□□□ 0.58
USF3Q68DE3 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USF3Q68DE3 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.69■□□□□ 0.58
USF3Q68DE3 AC105233.4-201ENST00000642045 216 ntBASIC18.69■□□□□ 0.58
USF3Q68DE3 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USF3Q68DE3 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USF3Q68DE3 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.69■□□□□ 0.58
USF3Q68DE3 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USF3Q68DE3 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
USF3Q68DE3 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.69■□□□□ 0.58
USF3Q68DE3 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.69■□□□□ 0.58
USF3Q68DE3 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.69■□□□□ 0.58
USF3Q68DE3 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
USF3Q68DE3 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
USF3Q68DE3 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.68■□□□□ 0.58
USF3Q68DE3 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USF3Q68DE3 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USF3Q68DE3 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USF3Q68DE3 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
USF3Q68DE3 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USF3Q68DE3 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
USF3Q68DE3 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USF3Q68DE3 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
USF3Q68DE3 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USF3Q68DE3 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.68■□□□□ 0.58
USF3Q68DE3 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.68■□□□□ 0.58
USF3Q68DE3 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
USF3Q68DE3 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.68■□□□□ 0.58
USF3Q68DE3 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
USF3Q68DE3 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USF3Q68DE3 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USF3Q68DE3 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USF3Q68DE3 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.67■□□□□ 0.58
USF3Q68DE3 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
USF3Q68DE3 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
USF3Q68DE3 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
USF3Q68DE3 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USF3Q68DE3 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.66■□□□□ 0.58
USF3Q68DE3 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.66■□□□□ 0.58
USF3Q68DE3 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USF3Q68DE3 BX005040.4-201ENST00000637145 1518 ntBASIC18.66■□□□□ 0.58
USF3Q68DE3 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USF3Q68DE3 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USF3Q68DE3 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USF3Q68DE3 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USF3Q68DE3 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.66■□□□□ 0.58
USF3Q68DE3 AC006015.1-201ENST00000429970 570 ntBASIC18.66■□□□□ 0.58
USF3Q68DE3 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USF3Q68DE3 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USF3Q68DE3 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.66■□□□□ 0.58
USF3Q68DE3 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
USF3Q68DE3 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC18.65■□□□□ 0.58
USF3Q68DE3 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USF3Q68DE3 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USF3Q68DE3 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USF3Q68DE3 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USF3Q68DE3 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.65■□□□□ 0.58
USF3Q68DE3 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.65■□□□□ 0.58
USF3Q68DE3 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC18.65■□□□□ 0.58
USF3Q68DE3 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
USF3Q68DE3 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
USF3Q68DE3 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USF3Q68DE3 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USF3Q68DE3 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USF3Q68DE3 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.65■□□□□ 0.58
USF3Q68DE3 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.65■□□□□ 0.58
USF3Q68DE3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USF3Q68DE3 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms