Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 KRT19P1-201ENST00000405746 1186 ntBASIC20.88■□□□□ 0.93
COL28A1Q2UY09 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.88■□□□□ 0.93
COL28A1Q2UY09 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL28A1Q2UY09 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.88■□□□□ 0.93
COL28A1Q2UY09 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL28A1Q2UY09 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL28A1Q2UY09 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL28A1Q2UY09 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL28A1Q2UY09 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL28A1Q2UY09 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL28A1Q2UY09 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL28A1Q2UY09 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
COL28A1Q2UY09 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.87■□□□□ 0.93
COL28A1Q2UY09 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.87■□□□□ 0.93
COL28A1Q2UY09 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.87■□□□□ 0.93
COL28A1Q2UY09 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
COL28A1Q2UY09 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL28A1Q2UY09 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL28A1Q2UY09 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL28A1Q2UY09 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.87■□□□□ 0.93
COL28A1Q2UY09 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 KRT18P11-201ENST00000435214 1283 ntBASIC20.86■□□□□ 0.93
COL28A1Q2UY09 AC069152.1-201ENST00000438030 544 ntBASIC20.86■□□□□ 0.93
COL28A1Q2UY09 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 AL050303.2-201ENST00000619798 666 ntBASIC20.86■□□□□ 0.93
COL28A1Q2UY09 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
COL28A1Q2UY09 ABCB10P4-201ENST00000566803 2184 ntBASIC20.86■□□□□ 0.93
COL28A1Q2UY09 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.85■□□□□ 0.93
COL28A1Q2UY09 AC133637.1-201ENST00000624115 1537 ntBASIC20.85■□□□□ 0.93
COL28A1Q2UY09 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL28A1Q2UY09 KRT18P29-201ENST00000397031 1267 ntBASIC20.85■□□□□ 0.93
COL28A1Q2UY09 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL28A1Q2UY09 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.85■□□□□ 0.93
COL28A1Q2UY09 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.85■□□□□ 0.93
COL28A1Q2UY09 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL28A1Q2UY09 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL28A1Q2UY09 ALDH1A3-203ENST00000557963 1670 ntBASIC20.84■□□□□ 0.93
COL28A1Q2UY09 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL28A1Q2UY09 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL28A1Q2UY09 GUSBP6-202ENST00000438529 1198 ntBASIC20.84■□□□□ 0.93
COL28A1Q2UY09 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL28A1Q2UY09 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL28A1Q2UY09 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.84■□□□□ 0.93
COL28A1Q2UY09 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.84■□□□□ 0.93
COL28A1Q2UY09 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL28A1Q2UY09 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 POU5F1P3-201ENST00000428824 1078 ntBASIC20.83■□□□□ 0.93
COL28A1Q2UY09 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 TPRG1LP1-201ENST00000598702 760 ntBASIC20.83■□□□□ 0.93
COL28A1Q2UY09 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.83■□□□□ 0.93
COL28A1Q2UY09 ITM2C-210ENST00000620962 501 ntBASIC20.83■□□□□ 0.93
COL28A1Q2UY09 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL28A1Q2UY09 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL28A1Q2UY09 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL28A1Q2UY09 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL28A1Q2UY09 SLC29A4P1-201ENST00000398760 971 ntBASIC20.82■□□□□ 0.92
COL28A1Q2UY09 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.82■□□□□ 0.92
COL28A1Q2UY09 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.82■□□□□ 0.92
COL28A1Q2UY09 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.82■□□□□ 0.92
COL28A1Q2UY09 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
COL28A1Q2UY09 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL28A1Q2UY09 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL28A1Q2UY09 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.81■□□□□ 0.92
COL28A1Q2UY09 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.81■□□□□ 0.92
COL28A1Q2UY09 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.81■□□□□ 0.92
COL28A1Q2UY09 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL28A1Q2UY09 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL28A1Q2UY09 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL28A1Q2UY09 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL28A1Q2UY09 SLC7A5P2-201ENST00000553010 536 ntBASIC20.81■□□□□ 0.92
COL28A1Q2UY09 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.81■□□□□ 0.92
COL28A1Q2UY09 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL28A1Q2UY09 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
COL28A1Q2UY09 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 313.5 ms