Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
FOXA1P55317 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXA1P55317 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
FOXA1P55317 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXA1P55317 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXA1P55317 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXA1P55317 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
FOXA1P55317 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.08■□□□□ 0.97
FOXA1P55317 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
FOXA1P55317 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.08■□□□□ 0.96
FOXA1P55317 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
FOXA1P55317 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
FOXA1P55317 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXA1P55317 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
FOXA1P55317 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXA1P55317 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXA1P55317 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.07■□□□□ 0.96
FOXA1P55317 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.07■□□□□ 0.96
FOXA1P55317 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
FOXA1P55317 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.07■□□□□ 0.96
FOXA1P55317 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
FOXA1P55317 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXA1P55317 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXA1P55317 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXA1P55317 KRT16P3-201ENST00000439127 1283 ntBASIC21.07■□□□□ 0.96
FOXA1P55317 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.07■□□□□ 0.96
FOXA1P55317 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXA1P55317 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
FOXA1P55317 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
FOXA1P55317 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.07■□□□□ 0.96
FOXA1P55317 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.07■□□□□ 0.96
FOXA1P55317 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
FOXA1P55317 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXA1P55317 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
FOXA1P55317 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXA1P55317 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXA1P55317 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXA1P55317 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
FOXA1P55317 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.06■□□□□ 0.96
FOXA1P55317 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXA1P55317 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.06■□□□□ 0.96
FOXA1P55317 AL035685.1-201ENST00000636663 812 ntBASIC21.06■□□□□ 0.96
FOXA1P55317 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXA1P55317 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.06■□□□□ 0.96
FOXA1P55317 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXA1P55317 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.05■□□□□ 0.96
FOXA1P55317 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXA1P55317 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FOXA1P55317 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXA1P55317 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXA1P55317 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.05■□□□□ 0.96
FOXA1P55317 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.05■□□□□ 0.96
FOXA1P55317 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FOXA1P55317 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
FOXA1P55317 AC133637.1-201ENST00000624115 1537 ntBASIC21.04■□□□□ 0.96
FOXA1P55317 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
FOXA1P55317 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXA1P55317 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
FOXA1P55317 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXA1P55317 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
FOXA1P55317 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXA1P55317 AC241377.3-202ENST00000626088 1088 ntBASIC21.04■□□□□ 0.96
FOXA1P55317 AC241585.3-202ENST00000628937 1088 ntBASIC21.04■□□□□ 0.96
FOXA1P55317 AC245100.8-202ENST00000629247 1058 ntBASIC21.04■□□□□ 0.96
FOXA1P55317 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.04■□□□□ 0.96
FOXA1P55317 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.04■□□□□ 0.96
FOXA1P55317 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXA1P55317 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXA1P55317 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXA1P55317 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXA1P55317 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXA1P55317 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
FOXA1P55317 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
FOXA1P55317 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.03■□□□□ 0.96
FOXA1P55317 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
FOXA1P55317 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.03■□□□□ 0.96
FOXA1P55317 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.03■□□□□ 0.96
FOXA1P55317 pRNA.6-201ENST00000610482 90 ntBASIC21.03■□□□□ 0.96
FOXA1P55317 pRNA.5-201ENST00000612139 90 ntBASIC21.03■□□□□ 0.96
FOXA1P55317 pRNA.11-201ENST00000618423 90 ntBASIC21.03■□□□□ 0.96
FOXA1P55317 pRNA.13-201ENST00000619112 90 ntBASIC21.03■□□□□ 0.96
FOXA1P55317 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.03■□□□□ 0.96
FOXA1P55317 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
FOXA1P55317 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
FOXA1P55317 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
FOXA1P55317 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.03■□□□□ 0.96
FOXA1P55317 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
FOXA1P55317 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXA1P55317 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.02■□□□□ 0.96
FOXA1P55317 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXA1P55317 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXA1P55317 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.02■□□□□ 0.96
FOXA1P55317 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.02■□□□□ 0.96
FOXA1P55317 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.02■□□□□ 0.96
FOXA1P55317 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.02■□□□□ 0.96
FOXA1P55317 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
FOXA1P55317 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
FOXA1P55317 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXA1P55317 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXA1P55317 AC099791.2-201ENST00000605725 427 ntBASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms