Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV39A0A0B4J263 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
TRAV39A0A0B4J263 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
TRAV39A0A0B4J263 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC18.21■□□□□ 0.51
TRAV39A0A0B4J263 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.21■□□□□ 0.51
TRAV39A0A0B4J263 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV39A0A0B4J263 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.21■□□□□ 0.51
TRAV39A0A0B4J263 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV39A0A0B4J263 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV39A0A0B4J263 FBXW4P1-201ENST00000426721 2239 ntBASIC18.21■□□□□ 0.5
TRAV39A0A0B4J263 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
TRAV39A0A0B4J263 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 AC007375.3-201ENST00000600936 2314 ntBASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 SRR-208ENST00000576848 588 ntTSL 4 BASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 TRIR-202ENST00000588213 841 ntTSL 3 BASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 AC241377.3-202ENST00000626088 1088 ntBASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 AC241585.3-202ENST00000628937 1088 ntBASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 AC245100.8-202ENST00000629247 1058 ntBASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV39A0A0B4J263 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.19■□□□□ 0.5
TRAV39A0A0B4J263 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC18.18■□□□□ 0.5
TRAV39A0A0B4J263 AC133637.1-201ENST00000624115 1537 ntBASIC18.18■□□□□ 0.5
TRAV39A0A0B4J263 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.18■□□□□ 0.5
TRAV39A0A0B4J263 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
TRAV39A0A0B4J263 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV39A0A0B4J263 AL512631.2-201ENST00000604634 923 ntBASIC18.18■□□□□ 0.5
TRAV39A0A0B4J263 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC18.18■□□□□ 0.5
TRAV39A0A0B4J263 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV39A0A0B4J263 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAV39A0A0B4J263 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV39A0A0B4J263 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV39A0A0B4J263 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV39A0A0B4J263 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
TRAV39A0A0B4J263 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
TRAV39A0A0B4J263 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV39A0A0B4J263 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC18.17■□□□□ 0.5
TRAV39A0A0B4J263 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV39A0A0B4J263 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV39A0A0B4J263 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.17■□□□□ 0.5
TRAV39A0A0B4J263 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV39A0A0B4J263 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV39A0A0B4J263 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.17■□□□□ 0.5
TRAV39A0A0B4J263 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV39A0A0B4J263 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 SRD5A1P1-201ENST00000442297 786 ntBASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 MIR3181-201ENST00000578512 73 ntBASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV39A0A0B4J263 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
TRAV39A0A0B4J263 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV39A0A0B4J263 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.15■□□□□ 0.5
TRAV39A0A0B4J263 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
TRAV39A0A0B4J263 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV39A0A0B4J263 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
TRAV39A0A0B4J263 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV39A0A0B4J263 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV39A0A0B4J263 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.15■□□□□ 0.5
TRAV39A0A0B4J263 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC18.15■□□□□ 0.5
TRAV39A0A0B4J263 MIR4466-201ENST00000606121 54 ntBASIC18.15■□□□□ 0.5
TRAV39A0A0B4J263 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV39A0A0B4J263 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV39A0A0B4J263 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV39A0A0B4J263 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms