Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trav11A0A0B4J1J9 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trav11A0A0B4J1J9 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC13.24□□□□□ -0.29
Trav11A0A0B4J1J9 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trav11A0A0B4J1J9 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Trav11A0A0B4J1J9 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trav11A0A0B4J1J9 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC13.24□□□□□ -0.29
Trav11A0A0B4J1J9 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trav11A0A0B4J1J9 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
Trav11A0A0B4J1J9 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trav11A0A0B4J1J9 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trav11A0A0B4J1J9 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trav11A0A0B4J1J9 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Gm43566-201ENSMUST00000196851 808 ntBASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trav11A0A0B4J1J9 Shroom3-211ENSMUST00000225438 5742 ntBASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav11A0A0B4J1J9 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Gm10232-201ENSMUST00000089221 720 ntBASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav11A0A0B4J1J9 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trav11A0A0B4J1J9 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trav11A0A0B4J1J9 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 10.6 ms