Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
DDX28Q9NUL7 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.81■□□□□ 0.76
DDX28Q9NUL7 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
DDX28Q9NUL7 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
DDX28Q9NUL7 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
DDX28Q9NUL7 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.81■□□□□ 0.76
DDX28Q9NUL7 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
DDX28Q9NUL7 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DDX28Q9NUL7 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
DDX28Q9NUL7 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
DDX28Q9NUL7 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
DDX28Q9NUL7 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
DDX28Q9NUL7 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.77■□□□□ 0.76
DDX28Q9NUL7 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
DDX28Q9NUL7 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
DDX28Q9NUL7 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
DDX28Q9NUL7 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.77■□□□□ 0.76
DDX28Q9NUL7 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.77■□□□□ 0.76
DDX28Q9NUL7 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
DDX28Q9NUL7 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.77■□□□□ 0.76
DDX28Q9NUL7 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
DDX28Q9NUL7 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
DDX28Q9NUL7 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
DDX28Q9NUL7 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
DDX28Q9NUL7 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
DDX28Q9NUL7 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 AC009299.2-201ENST00000482477 511 ntBASIC19.76■□□□□ 0.75
DDX28Q9NUL7 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.76■□□□□ 0.75
DDX28Q9NUL7 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
DDX28Q9NUL7 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DDX28Q9NUL7 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
DDX28Q9NUL7 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DDX28Q9NUL7 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
DDX28Q9NUL7 AC021242.3-201ENST00000607598 1377 ntBASIC19.75■□□□□ 0.75
DDX28Q9NUL7 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DDX28Q9NUL7 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC19.75■□□□□ 0.75
DDX28Q9NUL7 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.75■□□□□ 0.75
DDX28Q9NUL7 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms