Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
CLHC1Q8NHS4 KRT16P3-201ENST00000439127 1283 ntBASIC20.91■□□□□ 0.94
CLHC1Q8NHS4 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.91■□□□□ 0.94
CLHC1Q8NHS4 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.91■□□□□ 0.94
CLHC1Q8NHS4 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.91■□□□□ 0.94
CLHC1Q8NHS4 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLHC1Q8NHS4 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLHC1Q8NHS4 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.9■□□□□ 0.94
CLHC1Q8NHS4 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLHC1Q8NHS4 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.9■□□□□ 0.94
CLHC1Q8NHS4 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLHC1Q8NHS4 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.9■□□□□ 0.94
CLHC1Q8NHS4 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.9■□□□□ 0.94
CLHC1Q8NHS4 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLHC1Q8NHS4 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.9■□□□□ 0.94
CLHC1Q8NHS4 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.9■□□□□ 0.94
CLHC1Q8NHS4 AL117332.1-201ENST00000622628 974 ntBASIC20.9■□□□□ 0.94
CLHC1Q8NHS4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.9■□□□□ 0.94
CLHC1Q8NHS4 AL035685.1-201ENST00000636663 812 ntBASIC20.9■□□□□ 0.94
CLHC1Q8NHS4 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
CLHC1Q8NHS4 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLHC1Q8NHS4 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLHC1Q8NHS4 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CLHC1Q8NHS4 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLHC1Q8NHS4 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.89■□□□□ 0.93
CLHC1Q8NHS4 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.89■□□□□ 0.93
CLHC1Q8NHS4 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
CLHC1Q8NHS4 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.89■□□□□ 0.93
CLHC1Q8NHS4 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLHC1Q8NHS4 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLHC1Q8NHS4 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.88■□□□□ 0.93
CLHC1Q8NHS4 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLHC1Q8NHS4 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.88■□□□□ 0.93
CLHC1Q8NHS4 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLHC1Q8NHS4 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLHC1Q8NHS4 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLHC1Q8NHS4 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.88■□□□□ 0.93
CLHC1Q8NHS4 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CLHC1Q8NHS4 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLHC1Q8NHS4 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CLHC1Q8NHS4 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLHC1Q8NHS4 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLHC1Q8NHS4 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLHC1Q8NHS4 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CLHC1Q8NHS4 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CLHC1Q8NHS4 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.87■□□□□ 0.93
CLHC1Q8NHS4 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.87■□□□□ 0.93
CLHC1Q8NHS4 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLHC1Q8NHS4 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLHC1Q8NHS4 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLHC1Q8NHS4 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLHC1Q8NHS4 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.87■□□□□ 0.93
CLHC1Q8NHS4 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLHC1Q8NHS4 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLHC1Q8NHS4 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.86■□□□□ 0.93
CLHC1Q8NHS4 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLHC1Q8NHS4 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CLHC1Q8NHS4 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLHC1Q8NHS4 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.86■□□□□ 0.93
CLHC1Q8NHS4 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLHC1Q8NHS4 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLHC1Q8NHS4 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.86■□□□□ 0.93
CLHC1Q8NHS4 AL137060.1-201ENST00000618151 2648 ntBASIC20.86■□□□□ 0.93
CLHC1Q8NHS4 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 AC006455.2-201ENST00000429931 906 ntBASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
CLHC1Q8NHS4 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
CLHC1Q8NHS4 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLHC1Q8NHS4 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.84■□□□□ 0.93
CLHC1Q8NHS4 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLHC1Q8NHS4 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.84■□□□□ 0.93
CLHC1Q8NHS4 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLHC1Q8NHS4 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLHC1Q8NHS4 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.84■□□□□ 0.93
CLHC1Q8NHS4 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLHC1Q8NHS4 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLHC1Q8NHS4 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CLHC1Q8NHS4 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CLHC1Q8NHS4 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLHC1Q8NHS4 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLHC1Q8NHS4 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLHC1Q8NHS4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLHC1Q8NHS4 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
CLHC1Q8NHS4 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLHC1Q8NHS4 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.83■□□□□ 0.93
CLHC1Q8NHS4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.83■□□□□ 0.93
CLHC1Q8NHS4 AL499627.2-201ENST00000606283 725 ntBASIC20.83■□□□□ 0.93
CLHC1Q8NHS4 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms