Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SLC44A3Q8N4M1 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC22.54■■□□□ 1.2
SLC44A3Q8N4M1 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SLC44A3Q8N4M1 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC22.54■■□□□ 1.2
SLC44A3Q8N4M1 DUX4L16-201ENST00000555130 1264 ntBASIC22.54■■□□□ 1.2
SLC44A3Q8N4M1 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC22.54■■□□□ 1.2
SLC44A3Q8N4M1 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC22.54■■□□□ 1.2
SLC44A3Q8N4M1 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SLC44A3Q8N4M1 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SLC44A3Q8N4M1 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SLC44A3Q8N4M1 SLC7A5P2-201ENST00000553010 536 ntBASIC22.53■■□□□ 1.2
SLC44A3Q8N4M1 KLF13-207ENST00000560473 489 ntTSL 3 BASIC22.53■■□□□ 1.2
SLC44A3Q8N4M1 AC104187.1-201ENST00000607510 612 ntBASIC22.53■■□□□ 1.2
SLC44A3Q8N4M1 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.53■■□□□ 1.2
SLC44A3Q8N4M1 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SLC44A3Q8N4M1 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC22.53■■□□□ 1.2
SLC44A3Q8N4M1 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SLC44A3Q8N4M1 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC22.52■■□□□ 1.2
SLC44A3Q8N4M1 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.2
SLC44A3Q8N4M1 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC22.52■■□□□ 1.2
SLC44A3Q8N4M1 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SLC44A3Q8N4M1 AC007322.1-201ENST00000426983 750 ntBASIC22.52■■□□□ 1.2
SLC44A3Q8N4M1 GUSBP6-202ENST00000438529 1198 ntBASIC22.52■■□□□ 1.2
SLC44A3Q8N4M1 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC22.52■■□□□ 1.2
SLC44A3Q8N4M1 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC22.52■■□□□ 1.2
SLC44A3Q8N4M1 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC22.52■■□□□ 1.2
SLC44A3Q8N4M1 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
SLC44A3Q8N4M1 TFG-210ENST00000620299 1289 ntTSL 5 BASIC22.52■■□□□ 1.2
SLC44A3Q8N4M1 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
SLC44A3Q8N4M1 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SLC44A3Q8N4M1 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.2
SLC44A3Q8N4M1 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
SLC44A3Q8N4M1 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SLC44A3Q8N4M1 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC22.51■■□□□ 1.19
SLC44A3Q8N4M1 METTL15-202ENST00000403099 795 ntTSL 5 BASIC22.51■■□□□ 1.19
SLC44A3Q8N4M1 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC22.51■■□□□ 1.19
SLC44A3Q8N4M1 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC22.51■■□□□ 1.19
SLC44A3Q8N4M1 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC22.51■■□□□ 1.19
SLC44A3Q8N4M1 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC22.51■■□□□ 1.19
SLC44A3Q8N4M1 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.51■■□□□ 1.19
SLC44A3Q8N4M1 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
SLC44A3Q8N4M1 AC005181.1-201ENST00000604782 1256 ntBASIC22.51■■□□□ 1.19
SLC44A3Q8N4M1 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.51■■□□□ 1.19
SLC44A3Q8N4M1 AC079630.1-202ENST00000618127 1840 ntBASIC22.51■■□□□ 1.19
SLC44A3Q8N4M1 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SLC44A3Q8N4M1 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
SLC44A3Q8N4M1 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC22.5■■□□□ 1.19
SLC44A3Q8N4M1 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SLC44A3Q8N4M1 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SLC44A3Q8N4M1 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SLC44A3Q8N4M1 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SLC44A3Q8N4M1 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SLC44A3Q8N4M1 OAS3-207ENST00000551007 998 ntTSL 2 BASIC22.5■■□□□ 1.19
SLC44A3Q8N4M1 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC22.5■■□□□ 1.19
SLC44A3Q8N4M1 AL138781.1-201ENST00000566567 1274 ntBASIC22.5■■□□□ 1.19
SLC44A3Q8N4M1 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC22.5■■□□□ 1.19
SLC44A3Q8N4M1 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC22.5■■□□□ 1.19
SLC44A3Q8N4M1 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SLC44A3Q8N4M1 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SLC44A3Q8N4M1 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC22.48■■□□□ 1.19
SLC44A3Q8N4M1 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
SLC44A3Q8N4M1 USP45-205ENST00000472914 1617 ntTSL 5 BASIC22.48■■□□□ 1.19
SLC44A3Q8N4M1 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
SLC44A3Q8N4M1 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
SLC44A3Q8N4M1 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SLC44A3Q8N4M1 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC22.48■■□□□ 1.19
SLC44A3Q8N4M1 KRT87P-202ENST00000534226 1464 ntBASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 AC138932.3-201ENST00000567634 1902 ntBASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 AC005224.4-201ENST00000583262 1652 ntBASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 PARP1-202ENST00000366792 553 ntTSL 3 BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SLC44A3Q8N4M1 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms