Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 AC079834.2-201ENST00000609776 1949 ntBASIC21.31■■□□□ 1
PTCHD3Q3KNS1 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 AC242852.2-201ENST00000615738 1807 ntBASIC21.31■■□□□ 1
PTCHD3Q3KNS1 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.31■■□□□ 1
PTCHD3Q3KNS1 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 AC080038.3-201ENST00000623346 1952 ntBASIC21.3■■□□□ 1
PTCHD3Q3KNS1 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 ECEL1P1-201ENST00000373592 1742 ntBASIC21.3■■□□□ 1
PTCHD3Q3KNS1 AC091305.1-201ENST00000479476 895 ntBASIC21.3■■□□□ 1
PTCHD3Q3KNS1 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 AC008764.7-201ENST00000593779 1081 ntBASIC21.3■■□□□ 1
PTCHD3Q3KNS1 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PTCHD3Q3KNS1 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
PTCHD3Q3KNS1 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.29■■□□□ 1
PTCHD3Q3KNS1 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
PTCHD3Q3KNS1 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.29■■□□□ 1
PTCHD3Q3KNS1 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.29■■□□□ 1
PTCHD3Q3KNS1 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.29■■□□□ 1
PTCHD3Q3KNS1 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
PTCHD3Q3KNS1 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.29■■□□□ 1
PTCHD3Q3KNS1 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
PTCHD3Q3KNS1 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.29■■□□□ 1
PTCHD3Q3KNS1 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.29■■□□□ 1
PTCHD3Q3KNS1 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.28■■□□□ 1
PTCHD3Q3KNS1 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTCHD3Q3KNS1 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTCHD3Q3KNS1 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
PTCHD3Q3KNS1 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.28■■□□□ 1
PTCHD3Q3KNS1 AC136469.2-201ENST00000623944 1028 ntBASIC21.28■■□□□ 1
PTCHD3Q3KNS1 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.28■■□□□ 1
PTCHD3Q3KNS1 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTCHD3Q3KNS1 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTCHD3Q3KNS1 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTCHD3Q3KNS1 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PTCHD3Q3KNS1 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.27■■□□□ 1
PTCHD3Q3KNS1 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.27■■□□□ 1
PTCHD3Q3KNS1 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.27■■□□□ 1
PTCHD3Q3KNS1 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
PTCHD3Q3KNS1 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.27■■□□□ 1
PTCHD3Q3KNS1 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
PTCHD3Q3KNS1 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.27■■□□□ 1
PTCHD3Q3KNS1 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.27■■□□□ 1
PTCHD3Q3KNS1 AC027682.1-201ENST00000562846 899 ntBASIC21.27■■□□□ 1
PTCHD3Q3KNS1 CA15P2-201ENST00000611168 834 ntBASIC21.27■■□□□ 1
PTCHD3Q3KNS1 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.27■■□□□ 1
PTCHD3Q3KNS1 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
PTCHD3Q3KNS1 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
PTCHD3Q3KNS1 LINC00526-201ENST00000581067 1875 ntBASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.26■□□□□ 0.99
PTCHD3Q3KNS1 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms