Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
SHMT1P34896 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC25.73■■□□□ 1.71
SHMT1P34896 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
SHMT1P34896 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
SHMT1P34896 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
SHMT1P34896 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SHMT1P34896 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
SHMT1P34896 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC25.72■■□□□ 1.71
SHMT1P34896 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SHMT1P34896 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SHMT1P34896 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC25.72■■□□□ 1.71
SHMT1P34896 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC25.72■■□□□ 1.71
SHMT1P34896 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SHMT1P34896 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SHMT1P34896 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SHMT1P34896 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
SHMT1P34896 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
SHMT1P34896 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
SHMT1P34896 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
SHMT1P34896 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC25.7■■□□□ 1.71
SHMT1P34896 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
SHMT1P34896 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC25.7■■□□□ 1.71
SHMT1P34896 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.71
SHMT1P34896 ASL-203ENST00000380839 1765 ntTSL 5 BASIC25.7■■□□□ 1.7
SHMT1P34896 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SHMT1P34896 AC004911.1-201ENST00000416316 871 ntBASIC25.7■■□□□ 1.7
SHMT1P34896 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SHMT1P34896 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC25.7■■□□□ 1.7
SHMT1P34896 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC25.7■■□□□ 1.7
SHMT1P34896 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SHMT1P34896 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC25.69■■□□□ 1.7
SHMT1P34896 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC25.69■■□□□ 1.7
SHMT1P34896 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SHMT1P34896 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SHMT1P34896 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SHMT1P34896 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SHMT1P34896 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
SHMT1P34896 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC25.69■■□□□ 1.7
SHMT1P34896 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
SHMT1P34896 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC25.69■■□□□ 1.7
SHMT1P34896 AC090192.1-201ENST00000517740 490 ntBASIC25.69■■□□□ 1.7
SHMT1P34896 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC25.69■■□□□ 1.7
SHMT1P34896 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC25.69■■□□□ 1.7
SHMT1P34896 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC25.69■■□□□ 1.7
SHMT1P34896 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
SHMT1P34896 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
SHMT1P34896 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC25.68■■□□□ 1.7
SHMT1P34896 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
SHMT1P34896 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SHMT1P34896 AP004607.4-201ENST00000530158 1459 ntBASIC25.68■■□□□ 1.7
SHMT1P34896 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC25.68■■□□□ 1.7
SHMT1P34896 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
SHMT1P34896 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC25.68■■□□□ 1.7
SHMT1P34896 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC25.68■■□□□ 1.7
SHMT1P34896 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC25.68■■□□□ 1.7
SHMT1P34896 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC25.68■■□□□ 1.7
SHMT1P34896 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC25.68■■□□□ 1.7
SHMT1P34896 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SHMT1P34896 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
SHMT1P34896 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SHMT1P34896 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC25.67■■□□□ 1.7
SHMT1P34896 DLX3-202ENST00000512495 834 ntTSL 2 BASIC25.67■■□□□ 1.7
SHMT1P34896 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC25.67■■□□□ 1.7
SHMT1P34896 AC004854.2-201ENST00000608450 1441 ntBASIC25.67■■□□□ 1.7
SHMT1P34896 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC25.67■■□□□ 1.7
SHMT1P34896 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
SHMT1P34896 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
SHMT1P34896 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
SHMT1P34896 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
SHMT1P34896 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC25.66■■□□□ 1.7
SHMT1P34896 GALNS-213ENST00000569433 723 ntTSL 3 BASIC25.66■■□□□ 1.7
SHMT1P34896 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC25.66■■□□□ 1.7
SHMT1P34896 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC25.66■■□□□ 1.7
SHMT1P34896 COX20-201ENST00000366528 568 ntTSL 2 BASIC25.65■■□□□ 1.7
SHMT1P34896 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SHMT1P34896 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SHMT1P34896 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC25.65■■□□□ 1.7
SHMT1P34896 LINC01960-201ENST00000563759 1884 ntBASIC25.65■■□□□ 1.7
SHMT1P34896 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC25.65■■□□□ 1.7
SHMT1P34896 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SHMT1P34896 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC25.65■■□□□ 1.7
SHMT1P34896 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SHMT1P34896 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SHMT1P34896 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
SHMT1P34896 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SHMT1P34896 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SHMT1P34896 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.7
SHMT1P34896 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
SHMT1P34896 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC25.64■■□□□ 1.7
SHMT1P34896 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC25.64■■□□□ 1.7
SHMT1P34896 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC25.64■■□□□ 1.7
SHMT1P34896 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
SHMT1P34896 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC25.64■■□□□ 1.69
SHMT1P34896 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
SHMT1P34896 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
SHMT1P34896 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC25.63■■□□□ 1.69
SHMT1P34896 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC25.63■■□□□ 1.69
SHMT1P34896 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC25.63■■□□□ 1.69
SHMT1P34896 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SHMT1P34896 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC25.63■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms