Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
USF1P22415 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.46■□□□□ 0.54
USF1P22415 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USF1P22415 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USF1P22415 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USF1P22415 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
USF1P22415 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USF1P22415 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
USF1P22415 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.45■□□□□ 0.54
USF1P22415 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
USF1P22415 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
USF1P22415 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.45■□□□□ 0.54
USF1P22415 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USF1P22415 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
USF1P22415 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USF1P22415 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
USF1P22415 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USF1P22415 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
USF1P22415 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.44■□□□□ 0.54
USF1P22415 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USF1P22415 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USF1P22415 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
USF1P22415 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USF1P22415 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.44■□□□□ 0.54
USF1P22415 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USF1P22415 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USF1P22415 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
USF1P22415 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.43■□□□□ 0.54
USF1P22415 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.43■□□□□ 0.54
USF1P22415 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
USF1P22415 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USF1P22415 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USF1P22415 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.43■□□□□ 0.54
USF1P22415 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.43■□□□□ 0.54
USF1P22415 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC18.43■□□□□ 0.54
USF1P22415 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.43■□□□□ 0.54
USF1P22415 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.43■□□□□ 0.54
USF1P22415 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USF1P22415 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
USF1P22415 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.43■□□□□ 0.54
USF1P22415 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USF1P22415 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USF1P22415 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
USF1P22415 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC18.42■□□□□ 0.54
USF1P22415 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USF1P22415 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.42■□□□□ 0.54
USF1P22415 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USF1P22415 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC18.42■□□□□ 0.54
USF1P22415 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USF1P22415 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.42■□□□□ 0.54
USF1P22415 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.42■□□□□ 0.54
USF1P22415 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.42■□□□□ 0.54
USF1P22415 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
USF1P22415 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
USF1P22415 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.42■□□□□ 0.54
USF1P22415 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USF1P22415 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
USF1P22415 DUSP8P5-201ENST00000422884 1815 ntBASIC18.42■□□□□ 0.54
USF1P22415 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
USF1P22415 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.41■□□□□ 0.54
USF1P22415 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USF1P22415 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.41■□□□□ 0.54
USF1P22415 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.41■□□□□ 0.54
USF1P22415 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USF1P22415 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
USF1P22415 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USF1P22415 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
USF1P22415 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.41■□□□□ 0.54
USF1P22415 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.41■□□□□ 0.54
USF1P22415 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.41■□□□□ 0.54
USF1P22415 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.41■□□□□ 0.54
USF1P22415 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.41■□□□□ 0.54
USF1P22415 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.41■□□□□ 0.54
USF1P22415 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
USF1P22415 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
USF1P22415 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USF1P22415 AC012676.1-201ENST00000574705 1949 ntBASIC18.41■□□□□ 0.54
USF1P22415 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
USF1P22415 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
USF1P22415 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USF1P22415 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USF1P22415 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
USF1P22415 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USF1P22415 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.4■□□□□ 0.54
USF1P22415 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USF1P22415 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
USF1P22415 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USF1P22415 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.4■□□□□ 0.54
USF1P22415 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.4■□□□□ 0.54
USF1P22415 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
USF1P22415 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USF1P22415 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USF1P22415 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.4■□□□□ 0.54
USF1P22415 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USF1P22415 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.4■□□□□ 0.54
USF1P22415 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
USF1P22415 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
USF1P22415 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
USF1P22415 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
USF1P22415 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms