Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HOXD4P09016 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
HOXD4P09016 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.73■□□□□ 0.75
HOXD4P09016 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
HOXD4P09016 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXD4P09016 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXD4P09016 LINC02228-203ENST00000641970 1355 ntBASIC19.72■□□□□ 0.75
HOXD4P09016 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXD4P09016 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
HOXD4P09016 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXD4P09016 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HOXD4P09016 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXD4P09016 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXD4P09016 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HOXD4P09016 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.72■□□□□ 0.75
HOXD4P09016 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HOXD4P09016 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXD4P09016 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD4P09016 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD4P09016 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
HOXD4P09016 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD4P09016 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
HOXD4P09016 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
HOXD4P09016 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXD4P09016 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.71■□□□□ 0.75
HOXD4P09016 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.71■□□□□ 0.75
HOXD4P09016 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.71■□□□□ 0.75
HOXD4P09016 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXD4P09016 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.71■□□□□ 0.75
HOXD4P09016 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD4P09016 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD4P09016 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD4P09016 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD4P09016 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD4P09016 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD4P09016 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD4P09016 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD4P09016 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD4P09016 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD4P09016 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXD4P09016 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD4P09016 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
HOXD4P09016 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.7■□□□□ 0.74
HOXD4P09016 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.7■□□□□ 0.74
HOXD4P09016 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.7■□□□□ 0.74
HOXD4P09016 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD4P09016 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXD4P09016 AL031602.1-201ENST00000633169 911 ntBASIC19.7■□□□□ 0.74
HOXD4P09016 AC105233.4-201ENST00000642045 216 ntBASIC19.7■□□□□ 0.74
HOXD4P09016 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD4P09016 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD4P09016 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD4P09016 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD4P09016 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD4P09016 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
HOXD4P09016 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD4P09016 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXD4P09016 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD4P09016 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
HOXD4P09016 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD4P09016 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD4P09016 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.69■□□□□ 0.74
HOXD4P09016 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD4P09016 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD4P09016 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.69■□□□□ 0.74
HOXD4P09016 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.69■□□□□ 0.74
HOXD4P09016 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD4P09016 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.69■□□□□ 0.74
HOXD4P09016 AC087239.1-201ENST00000622671 572 ntBASIC19.69■□□□□ 0.74
HOXD4P09016 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
HOXD4P09016 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD4P09016 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
HOXD4P09016 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
HOXD4P09016 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD4P09016 LINC01124-201ENST00000409786 2117 ntBASIC19.69■□□□□ 0.74
HOXD4P09016 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD4P09016 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD4P09016 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD4P09016 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD4P09016 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD4P09016 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD4P09016 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.68■□□□□ 0.74
HOXD4P09016 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD4P09016 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.68■□□□□ 0.74
HOXD4P09016 DUX4L2-201ENST00000561772 1275 ntBASIC19.68■□□□□ 0.74
HOXD4P09016 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.68■□□□□ 0.74
HOXD4P09016 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.68■□□□□ 0.74
HOXD4P09016 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.68■□□□□ 0.74
HOXD4P09016 MIR6084-201ENST00000622012 110 ntBASIC19.68■□□□□ 0.74
HOXD4P09016 DUX4L6-201ENST00000626483 1275 ntBASIC19.68■□□□□ 0.74
HOXD4P09016 DUX4L1-201ENST00000627662 1275 ntBASIC19.68■□□□□ 0.74
HOXD4P09016 DUX4L8-201ENST00000629013 1275 ntBASIC19.68■□□□□ 0.74
HOXD4P09016 DUX4L3-201ENST00000630187 1275 ntBASIC19.68■□□□□ 0.74
HOXD4P09016 DUX4L7-201ENST00000630678 1275 ntBASIC19.68■□□□□ 0.74
HOXD4P09016 DUX4L5-201ENST00000630834 1275 ntBASIC19.68■□□□□ 0.74
HOXD4P09016 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.68■□□□□ 0.74
HOXD4P09016 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.68■□□□□ 0.74
HOXD4P09016 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD4P09016 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD4P09016 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms