Protein–RNA interactions for Protein: Q9NSD5

SLC6A13, Sodium- and chloride-dependent GABA transporter 2, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A13Q9NSD5 MIR4787-201ENST00000607364 84 ntBASIC20.69■□□□□ 0.9
SLC6A13Q9NSD5 AC026310.3-201ENST00000625186 2373 ntBASIC20.69■□□□□ 0.9
SLC6A13Q9NSD5 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC6A13Q9NSD5 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SLC6A13Q9NSD5 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 RARRES2P1-201ENST00000474487 481 ntBASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 KRT125P-201ENST00000546827 989 ntBASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 Z92544.1-202ENST00000571933 1220 ntBASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 MTDHP2-201ENST00000601468 714 ntBASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 FAM99A-202ENST00000538190 1989 ntBASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A13Q9NSD5 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC6A13Q9NSD5 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC6A13Q9NSD5 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SLC6A13Q9NSD5 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.67■□□□□ 0.9
SLC6A13Q9NSD5 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SLC6A13Q9NSD5 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SLC6A13Q9NSD5 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC6A13Q9NSD5 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SLC6A13Q9NSD5 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC6A13Q9NSD5 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC6A13Q9NSD5 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SLC6A13Q9NSD5 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SLC6A13Q9NSD5 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 AC239859.2-201ENST00000444165 318 ntBASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC6A13Q9NSD5 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
SLC6A13Q9NSD5 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC6A13Q9NSD5 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC6A13Q9NSD5 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
SLC6A13Q9NSD5 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.65■□□□□ 0.9
SLC6A13Q9NSD5 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC6A13Q9NSD5 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.65■□□□□ 0.9
SLC6A13Q9NSD5 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SLC6A13Q9NSD5 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
SLC6A13Q9NSD5 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.64■□□□□ 0.9
SLC6A13Q9NSD5 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.64■□□□□ 0.9
SLC6A13Q9NSD5 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC6A13Q9NSD5 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SLC6A13Q9NSD5 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC6A13Q9NSD5 AC010997.5-201ENST00000609182 354 ntBASIC20.64■□□□□ 0.89
SLC6A13Q9NSD5 CA15P2-201ENST00000611168 834 ntBASIC20.64■□□□□ 0.89
SLC6A13Q9NSD5 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC6A13Q9NSD5 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC6A13Q9NSD5 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SLC6A13Q9NSD5 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC6A13Q9NSD5 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SLC6A13Q9NSD5 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.64■□□□□ 0.89
SLC6A13Q9NSD5 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC6A13Q9NSD5 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
SLC6A13Q9NSD5 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.63■□□□□ 0.89
SLC6A13Q9NSD5 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC6A13Q9NSD5 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.63■□□□□ 0.89
SLC6A13Q9NSD5 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC6A13Q9NSD5 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC6A13Q9NSD5 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.63■□□□□ 0.89
SLC6A13Q9NSD5 TSPY9P-201ENST00000440215 945 ntBASIC20.63■□□□□ 0.89
SLC6A13Q9NSD5 TSPY11P-201ENST00000442607 1045 ntBASIC20.63■□□□□ 0.89
SLC6A13Q9NSD5 AC009299.2-201ENST00000482477 511 ntBASIC20.63■□□□□ 0.89
SLC6A13Q9NSD5 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.63■□□□□ 0.89
SLC6A13Q9NSD5 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.63■□□□□ 0.89
SLC6A13Q9NSD5 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC6A13Q9NSD5 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SLC6A13Q9NSD5 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC6A13Q9NSD5 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC6A13Q9NSD5 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC6A13Q9NSD5 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC6A13Q9NSD5 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC6A13Q9NSD5 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.62■□□□□ 0.89
SLC6A13Q9NSD5 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SLC6A13Q9NSD5 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
SLC6A13Q9NSD5 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC6A13Q9NSD5 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SLC6A13Q9NSD5 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.62■□□□□ 0.89
SLC6A13Q9NSD5 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SLC6A13Q9NSD5 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms