Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.67■□□□□ 0.74
PTP4A1Q93096 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.67■□□□□ 0.74
PTP4A1Q93096 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
PTP4A1Q93096 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.67■□□□□ 0.74
PTP4A1Q93096 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTP4A1Q93096 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTP4A1Q93096 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTP4A1Q93096 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTP4A1Q93096 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTP4A1Q93096 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
PTP4A1Q93096 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTP4A1Q93096 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.66■□□□□ 0.74
PTP4A1Q93096 AC009086.3-201ENST00000623486 1008 ntBASIC19.66■□□□□ 0.74
PTP4A1Q93096 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.66■□□□□ 0.74
PTP4A1Q93096 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTP4A1Q93096 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.66■□□□□ 0.74
PTP4A1Q93096 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.66■□□□□ 0.74
PTP4A1Q93096 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.66■□□□□ 0.74
PTP4A1Q93096 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTP4A1Q93096 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTP4A1Q93096 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.65■□□□□ 0.74
PTP4A1Q93096 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTP4A1Q93096 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.65■□□□□ 0.74
PTP4A1Q93096 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTP4A1Q93096 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTP4A1Q93096 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
PTP4A1Q93096 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
PTP4A1Q93096 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.64■□□□□ 0.73
PTP4A1Q93096 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTP4A1Q93096 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PTP4A1Q93096 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.64■□□□□ 0.73
PTP4A1Q93096 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.64■□□□□ 0.73
PTP4A1Q93096 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.64■□□□□ 0.73
PTP4A1Q93096 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTP4A1Q93096 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTP4A1Q93096 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTP4A1Q93096 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTP4A1Q93096 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTP4A1Q93096 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTP4A1Q93096 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.63■□□□□ 0.73
PTP4A1Q93096 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTP4A1Q93096 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTP4A1Q93096 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTP4A1Q93096 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PTP4A1Q93096 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.63■□□□□ 0.73
PTP4A1Q93096 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.63■□□□□ 0.73
PTP4A1Q93096 AC009102.2-201ENST00000606772 1639 ntBASIC19.63■□□□□ 0.73
PTP4A1Q93096 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PTP4A1Q93096 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PTP4A1Q93096 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.63■□□□□ 0.73
PTP4A1Q93096 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
PTP4A1Q93096 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.63■□□□□ 0.73
PTP4A1Q93096 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.63■□□□□ 0.73
PTP4A1Q93096 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
PTP4A1Q93096 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PTP4A1Q93096 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTP4A1Q93096 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTP4A1Q93096 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
PTP4A1Q93096 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTP4A1Q93096 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PTP4A1Q93096 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
PTP4A1Q93096 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.62■□□□□ 0.73
PTP4A1Q93096 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.62■□□□□ 0.73
PTP4A1Q93096 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.62■□□□□ 0.73
PTP4A1Q93096 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTP4A1Q93096 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTP4A1Q93096 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PTP4A1Q93096 AC010542.4-201ENST00000563151 1910 ntBASIC19.62■□□□□ 0.73
PTP4A1Q93096 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTP4A1Q93096 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.62■□□□□ 0.73
PTP4A1Q93096 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTP4A1Q93096 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTP4A1Q93096 AC026310.3-201ENST00000625186 2373 ntBASIC19.62■□□□□ 0.73
PTP4A1Q93096 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
PTP4A1Q93096 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.61■□□□□ 0.73
PTP4A1Q93096 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.61■□□□□ 0.73
PTP4A1Q93096 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTP4A1Q93096 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PTP4A1Q93096 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
PTP4A1Q93096 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PTP4A1Q93096 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.61■□□□□ 0.73
PTP4A1Q93096 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.61■□□□□ 0.73
PTP4A1Q93096 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTP4A1Q93096 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTP4A1Q93096 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTP4A1Q93096 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.61■□□□□ 0.73
PTP4A1Q93096 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PTP4A1Q93096 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PTP4A1Q93096 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PTP4A1Q93096 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTP4A1Q93096 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
PTP4A1Q93096 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTP4A1Q93096 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PTP4A1Q93096 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.6■□□□□ 0.73
PTP4A1Q93096 MTDHP2-201ENST00000601468 714 ntBASIC19.6■□□□□ 0.73
PTP4A1Q93096 AC010997.5-201ENST00000609182 354 ntBASIC19.6■□□□□ 0.73
PTP4A1Q93096 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.6■□□□□ 0.73
PTP4A1Q93096 AC004687.1-201ENST00000579003 1625 ntBASIC19.6■□□□□ 0.73
PTP4A1Q93096 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTP4A1Q93096 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms