Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 KRT18P6-201ENST00000555540 1265 ntBASIC22.08■■□□□ 1.13
CXCL12P48061 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC22.08■■□□□ 1.13
CXCL12P48061 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC22.08■■□□□ 1.13
CXCL12P48061 MAZ-216ENST00000616501 991 ntTSL 5 BASIC22.08■■□□□ 1.13
CXCL12P48061 AC231657.2-201ENST00000624556 255 ntBASIC22.08■■□□□ 1.13
CXCL12P48061 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.08■■□□□ 1.13
CXCL12P48061 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CXCL12P48061 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CXCL12P48061 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CXCL12P48061 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC22.07■■□□□ 1.12
CXCL12P48061 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC22.07■■□□□ 1.12
CXCL12P48061 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC22.07■■□□□ 1.12
CXCL12P48061 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC22.07■■□□□ 1.12
CXCL12P48061 AL050303.2-201ENST00000619798 666 ntBASIC22.07■■□□□ 1.12
CXCL12P48061 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
CXCL12P48061 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CXCL12P48061 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
CXCL12P48061 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CXCL12P48061 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC22.07■■□□□ 1.12
CXCL12P48061 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CXCL12P48061 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CXCL12P48061 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC22.06■■□□□ 1.12
CXCL12P48061 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CXCL12P48061 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CXCL12P48061 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
CXCL12P48061 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CXCL12P48061 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
CXCL12P48061 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CXCL12P48061 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC22.06■■□□□ 1.12
CXCL12P48061 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC22.05■■□□□ 1.12
CXCL12P48061 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC22.05■■□□□ 1.12
CXCL12P48061 AC007322.1-201ENST00000426983 750 ntBASIC22.05■■□□□ 1.12
CXCL12P48061 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CXCL12P48061 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CXCL12P48061 OXCT2P1-201ENST00000447263 1535 ntBASIC22.05■■□□□ 1.12
CXCL12P48061 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CXCL12P48061 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
CXCL12P48061 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC22.04■■□□□ 1.12
CXCL12P48061 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC22.03■■□□□ 1.12
CXCL12P48061 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC22.03■■□□□ 1.12
CXCL12P48061 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC22.03■■□□□ 1.12
CXCL12P48061 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CXCL12P48061 KLF13-207ENST00000560473 489 ntTSL 3 BASIC22.03■■□□□ 1.12
CXCL12P48061 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC22.03■■□□□ 1.12
CXCL12P48061 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CXCL12P48061 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC22.03■■□□□ 1.12
CXCL12P48061 AC005181.1-201ENST00000604782 1256 ntBASIC22.03■■□□□ 1.12
CXCL12P48061 AC104187.1-201ENST00000607510 612 ntBASIC22.03■■□□□ 1.12
CXCL12P48061 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CXCL12P48061 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CXCL12P48061 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CXCL12P48061 ASL-203ENST00000380839 1765 ntTSL 5 BASIC22.02■■□□□ 1.12
CXCL12P48061 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CXCL12P48061 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CXCL12P48061 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CXCL12P48061 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CXCL12P48061 SLC29A4P1-201ENST00000398760 971 ntBASIC22.02■■□□□ 1.12
CXCL12P48061 SLC7A5P2-201ENST00000553010 536 ntBASIC22.02■■□□□ 1.12
CXCL12P48061 DUX4L16-201ENST00000555130 1264 ntBASIC22.02■■□□□ 1.12
CXCL12P48061 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.02■■□□□ 1.12
CXCL12P48061 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC22.02■■□□□ 1.12
CXCL12P48061 TFG-210ENST00000620299 1289 ntTSL 5 BASIC22.02■■□□□ 1.12
CXCL12P48061 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC22.02■■□□□ 1.12
CXCL12P48061 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.02■■□□□ 1.12
CXCL12P48061 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
CXCL12P48061 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CXCL12P48061 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
CXCL12P48061 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
CXCL12P48061 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CXCL12P48061 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
CXCL12P48061 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CXCL12P48061 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CXCL12P48061 METTL15-202ENST00000403099 795 ntTSL 5 BASIC22.01■■□□□ 1.11
CXCL12P48061 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC22.01■■□□□ 1.11
CXCL12P48061 OAS3-207ENST00000551007 998 ntTSL 2 BASIC22.01■■□□□ 1.11
CXCL12P48061 RGMA-211ENST00000557420 989 ntTSL 3 BASIC22.01■■□□□ 1.11
CXCL12P48061 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC22.01■■□□□ 1.11
CXCL12P48061 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC22.01■■□□□ 1.11
CXCL12P48061 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC22.01■■□□□ 1.11
CXCL12P48061 PFKL-212ENST00000628044 129 ntTSL 3 BASIC22.01■■□□□ 1.11
CXCL12P48061 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CXCL12P48061 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CXCL12P48061 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
CXCL12P48061 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC22■■□□□ 1.11
CXCL12P48061 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CXCL12P48061 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CXCL12P48061 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CXCL12P48061 GUSBP6-202ENST00000438529 1198 ntBASIC22■■□□□ 1.11
CXCL12P48061 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC22■■□□□ 1.11
CXCL12P48061 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC22■■□□□ 1.11
CXCL12P48061 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC22■■□□□ 1.11
CXCL12P48061 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
CXCL12P48061 KRT87P-202ENST00000534226 1464 ntBASIC22■■□□□ 1.11
CXCL12P48061 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CXCL12P48061 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC22■■□□□ 1.11
CXCL12P48061 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
CXCL12P48061 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
CXCL12P48061 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.99■■□□□ 1.11
CXCL12P48061 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CXCL12P48061 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms