Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
FOXA1P55317 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.32■■□□□ 1
FOXA1P55317 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.31■■□□□ 1
FOXA1P55317 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.31■■□□□ 1
FOXA1P55317 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.31■■□□□ 1
FOXA1P55317 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.31■■□□□ 1
FOXA1P55317 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.31■■□□□ 1
FOXA1P55317 FBXW4P1-201ENST00000426721 2239 ntBASIC21.31■■□□□ 1
FOXA1P55317 AC004687.1-201ENST00000579003 1625 ntBASIC21.31■■□□□ 1
FOXA1P55317 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.31■■□□□ 1
FOXA1P55317 AC009086.3-201ENST00000623486 1008 ntBASIC21.31■■□□□ 1
FOXA1P55317 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FOXA1P55317 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
FOXA1P55317 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FOXA1P55317 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FOXA1P55317 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXA1P55317 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
FOXA1P55317 AC009299.2-201ENST00000482477 511 ntBASIC21.3■■□□□ 1
FOXA1P55317 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.3■■□□□ 1
FOXA1P55317 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXA1P55317 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.3■■□□□ 1
FOXA1P55317 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXA1P55317 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXA1P55317 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.3■■□□□ 1
FOXA1P55317 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXA1P55317 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.29■■□□□ 1
FOXA1P55317 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
FOXA1P55317 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.29■■□□□ 1
FOXA1P55317 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.29■■□□□ 1
FOXA1P55317 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXA1P55317 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.29■■□□□ 1
FOXA1P55317 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
FOXA1P55317 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXA1P55317 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
FOXA1P55317 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.29■■□□□ 1
FOXA1P55317 TSPY9P-201ENST00000440215 945 ntBASIC21.29■■□□□ 1
FOXA1P55317 TSPY11P-201ENST00000442607 1045 ntBASIC21.29■■□□□ 1
FOXA1P55317 AL451085.2-201ENST00000605085 799 ntBASIC21.29■■□□□ 1
FOXA1P55317 AC010997.5-201ENST00000609182 354 ntBASIC21.29■■□□□ 1
FOXA1P55317 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.29■■□□□ 1
FOXA1P55317 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXA1P55317 C17orf82-201ENST00000623772 1530 ntBASIC21.29■■□□□ 1
FOXA1P55317 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXA1P55317 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.28■■□□□ 1
FOXA1P55317 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXA1P55317 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.28■■□□□ 1
FOXA1P55317 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.28■■□□□ 1
FOXA1P55317 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
FOXA1P55317 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
FOXA1P55317 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
FOXA1P55317 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.28■■□□□ 1
FOXA1P55317 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXA1P55317 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.28■■□□□ 1
FOXA1P55317 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXA1P55317 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.28■■□□□ 1
FOXA1P55317 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.28■■□□□ 1
FOXA1P55317 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.28■■□□□ 1
FOXA1P55317 AL137060.1-201ENST00000618151 2648 ntBASIC21.27■■□□□ 1
FOXA1P55317 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
FOXA1P55317 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.27■■□□□ 1
FOXA1P55317 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.27■■□□□ 1
FOXA1P55317 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
FOXA1P55317 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.27■■□□□ 1
FOXA1P55317 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
FOXA1P55317 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
FOXA1P55317 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
FOXA1P55317 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.27■□□□□ 0.99
FOXA1P55317 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXA1P55317 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXA1P55317 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.26■□□□□ 0.99
FOXA1P55317 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
FOXA1P55317 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
FOXA1P55317 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.26■□□□□ 0.99
FOXA1P55317 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
FOXA1P55317 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.26■□□□□ 0.99
FOXA1P55317 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.26■□□□□ 0.99
FOXA1P55317 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXA1P55317 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
FOXA1P55317 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.26■□□□□ 0.99
FOXA1P55317 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
FOXA1P55317 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
FOXA1P55317 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
FOXA1P55317 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
FOXA1P55317 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
FOXA1P55317 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.25■□□□□ 0.99
FOXA1P55317 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
FOXA1P55317 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
FOXA1P55317 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
FOXA1P55317 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
FOXA1P55317 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
FOXA1P55317 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
FOXA1P55317 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.24■□□□□ 0.99
FOXA1P55317 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.24■□□□□ 0.99
FOXA1P55317 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
FOXA1P55317 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.24■□□□□ 0.99
FOXA1P55317 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
FOXA1P55317 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA1P55317 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA1P55317 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
FOXA1P55317 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms