Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 AC007952.6-201ENST00000573168 2673 ntBASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 AC003957.1-201ENST00000625108 2673 ntBASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
TRAV1-1A0A0B4J248 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
TRAV1-1A0A0B4J248 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC17.21■□□□□ 0.34
TRAV1-1A0A0B4J248 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRAV1-1A0A0B4J248 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV1-1A0A0B4J248 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAV1-1A0A0B4J248 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV1-1A0A0B4J248 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV1-1A0A0B4J248 AL592295.1-201ENST00000400984 884 ntBASIC17.2■□□□□ 0.34
TRAV1-1A0A0B4J248 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV1-1A0A0B4J248 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC17.2■□□□□ 0.34
TRAV1-1A0A0B4J248 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAV1-1A0A0B4J248 RAP2CP1-202ENST00000605179 643 ntBASIC17.2■□□□□ 0.34
TRAV1-1A0A0B4J248 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV1-1A0A0B4J248 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.2■□□□□ 0.34
TRAV1-1A0A0B4J248 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV1-1A0A0B4J248 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
TRAV1-1A0A0B4J248 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 ECEL1P2-201ENST00000461596 1295 ntBASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 GFER-205ENST00000569451 517 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 AC026202.3-201ENST00000600805 1127 ntBASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV1-1A0A0B4J248 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV1-1A0A0B4J248 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV1-1A0A0B4J248 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
TRAV1-1A0A0B4J248 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV1-1A0A0B4J248 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV1-1A0A0B4J248 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV1-1A0A0B4J248 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV1-1A0A0B4J248 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAV1-1A0A0B4J248 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV1-1A0A0B4J248 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV1-1A0A0B4J248 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV1-1A0A0B4J248 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV1-1A0A0B4J248 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 RNF165-205ENST00000588679 2904 ntBASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV1-1A0A0B4J248 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
TRAV1-1A0A0B4J248 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV1-1A0A0B4J248 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TRAV1-1A0A0B4J248 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC17.15■□□□□ 0.34
TRAV1-1A0A0B4J248 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV1-1A0A0B4J248 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
TRAV1-1A0A0B4J248 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV1-1A0A0B4J248 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV1-1A0A0B4J248 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV1-1A0A0B4J248 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV1-1A0A0B4J248 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.15■□□□□ 0.34
TRAV1-1A0A0B4J248 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
TRAV1-1A0A0B4J248 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms