Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.8■□□□□ 0.92
PTCHD1Q96NR3 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTCHD1Q96NR3 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.79■□□□□ 0.92
PTCHD1Q96NR3 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTCHD1Q96NR3 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PTCHD1Q96NR3 AP001330.3-201ENST00000520123 633 ntBASIC20.79■□□□□ 0.92
PTCHD1Q96NR3 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.79■□□□□ 0.92
PTCHD1Q96NR3 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
PTCHD1Q96NR3 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.79■□□□□ 0.92
PTCHD1Q96NR3 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.79■□□□□ 0.92
PTCHD1Q96NR3 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 AC004687.1-201ENST00000579003 1625 ntBASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 C9orf163-202ENST00000624034 2573 ntBASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 AL136967.2-201ENST00000623968 743 ntBASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.78■□□□□ 0.92
PTCHD1Q96NR3 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
PTCHD1Q96NR3 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.77■□□□□ 0.92
PTCHD1Q96NR3 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTCHD1Q96NR3 MIR939-201ENST00000401314 82 ntBASIC20.77■□□□□ 0.92
PTCHD1Q96NR3 BX842568.3-201ENST00000418104 571 ntBASIC20.77■□□□□ 0.92
PTCHD1Q96NR3 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PTCHD1Q96NR3 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.77■□□□□ 0.92
PTCHD1Q96NR3 AC233992.3-201ENST00000607491 485 ntBASIC20.77■□□□□ 0.92
PTCHD1Q96NR3 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTCHD1Q96NR3 AC133561.1-201ENST00000568600 2415 ntBASIC20.77■□□□□ 0.92
PTCHD1Q96NR3 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.77■□□□□ 0.92
PTCHD1Q96NR3 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PTCHD1Q96NR3 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
PTCHD1Q96NR3 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
PTCHD1Q96NR3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
PTCHD1Q96NR3 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.76■□□□□ 0.91
PTCHD1Q96NR3 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD1Q96NR3 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.76■□□□□ 0.91
PTCHD1Q96NR3 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD1Q96NR3 AC027682.1-201ENST00000562846 899 ntBASIC20.76■□□□□ 0.91
PTCHD1Q96NR3 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.76■□□□□ 0.91
PTCHD1Q96NR3 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.76■□□□□ 0.91
PTCHD1Q96NR3 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD1Q96NR3 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.76■□□□□ 0.91
PTCHD1Q96NR3 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.76■□□□□ 0.91
PTCHD1Q96NR3 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.75■□□□□ 0.91
PTCHD1Q96NR3 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTCHD1Q96NR3 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
PTCHD1Q96NR3 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
PTCHD1Q96NR3 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.75■□□□□ 0.91
PTCHD1Q96NR3 AC099791.1-201ENST00000416440 715 ntBASIC20.75■□□□□ 0.91
PTCHD1Q96NR3 SLC47A1P1-202ENST00000449666 945 ntBASIC20.75■□□□□ 0.91
PTCHD1Q96NR3 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTCHD1Q96NR3 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
PTCHD1Q96NR3 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.75■□□□□ 0.91
PTCHD1Q96NR3 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
PTCHD1Q96NR3 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
PTCHD1Q96NR3 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
PTCHD1Q96NR3 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 AC091305.1-201ENST00000479476 895 ntBASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 DUSP8P3-201ENST00000399571 1760 ntBASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD1Q96NR3 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PTCHD1Q96NR3 RASA4CP-201ENST00000424092 1398 ntBASIC20.73■□□□□ 0.91
PTCHD1Q96NR3 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTCHD1Q96NR3 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PTCHD1Q96NR3 OR2I1P-207ENST00000453522 948 ntBASIC20.73■□□□□ 0.91
PTCHD1Q96NR3 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.73■□□□□ 0.91
PTCHD1Q96NR3 AC010525.1-201ENST00000585559 441 ntBASIC20.73■□□□□ 0.91
PTCHD1Q96NR3 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
PTCHD1Q96NR3 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PTCHD1Q96NR3 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 AC126544.1-201ENST00000580842 1059 ntBASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms