Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC27.4■■□□□ 1.98
COL4A1P02462 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC27.4■■□□□ 1.98
COL4A1P02462 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC27.4■■□□□ 1.98
COL4A1P02462 AC105233.4-201ENST00000642045 216 ntBASIC27.4■■□□□ 1.98
COL4A1P02462 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC27.39■■□□□ 1.98
COL4A1P02462 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC27.39■■□□□ 1.97
COL4A1P02462 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
COL4A1P02462 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC27.39■■□□□ 1.97
COL4A1P02462 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC27.39■■□□□ 1.97
COL4A1P02462 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC27.39■■□□□ 1.97
COL4A1P02462 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC27.38■■□□□ 1.97
COL4A1P02462 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL4A1P02462 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL4A1P02462 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL4A1P02462 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL4A1P02462 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC27.38■■□□□ 1.97
COL4A1P02462 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC27.38■■□□□ 1.97
COL4A1P02462 VPS53-216ENST00000574029 585 ntTSL 4 BASIC27.38■■□□□ 1.97
COL4A1P02462 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC27.38■■□□□ 1.97
COL4A1P02462 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
COL4A1P02462 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
COL4A1P02462 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
COL4A1P02462 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
COL4A1P02462 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
COL4A1P02462 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC27.37■■□□□ 1.97
COL4A1P02462 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC27.36■■□□□ 1.97
COL4A1P02462 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC27.36■■□□□ 1.97
COL4A1P02462 NTF6G-201ENST00000591094 616 ntBASIC27.36■■□□□ 1.97
COL4A1P02462 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC27.36■■□□□ 1.97
COL4A1P02462 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
COL4A1P02462 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
COL4A1P02462 MPST-204ENST00000404393 1329 ntTSL 5 BASIC27.36■■□□□ 1.97
COL4A1P02462 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC27.36■■□□□ 1.97
COL4A1P02462 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC27.36■■□□□ 1.97
COL4A1P02462 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC27.36■■□□□ 1.97
COL4A1P02462 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC27.36■■□□□ 1.97
COL4A1P02462 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC27.36■■□□□ 1.97
COL4A1P02462 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
COL4A1P02462 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
COL4A1P02462 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC27.35■■□□□ 1.97
COL4A1P02462 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
COL4A1P02462 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
COL4A1P02462 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
COL4A1P02462 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC27.35■■□□□ 1.97
COL4A1P02462 DENND3-207ENST00000518347 850 ntTSL 2 BASIC27.35■■□□□ 1.97
COL4A1P02462 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
COL4A1P02462 RARA-203ENST00000394086 2008 ntTSL 2 BASIC27.34■■□□□ 1.97
COL4A1P02462 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC27.34■■□□□ 1.97
COL4A1P02462 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
COL4A1P02462 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC27.34■■□□□ 1.97
COL4A1P02462 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC27.34■■□□□ 1.97
COL4A1P02462 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL4A1P02462 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL4A1P02462 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
COL4A1P02462 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.97
COL4A1P02462 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.97
COL4A1P02462 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC27.33■■□□□ 1.97
COL4A1P02462 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC27.33■■□□□ 1.97
COL4A1P02462 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC27.33■■□□□ 1.97
COL4A1P02462 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC27.33■■□□□ 1.97
COL4A1P02462 RAP2CP1-201ENST00000605103 478 ntBASIC27.33■■□□□ 1.97
COL4A1P02462 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
COL4A1P02462 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
COL4A1P02462 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
COL4A1P02462 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
COL4A1P02462 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC27.32■■□□□ 1.96
COL4A1P02462 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC27.32■■□□□ 1.96
COL4A1P02462 LINC02228-203ENST00000641970 1355 ntBASIC27.32■■□□□ 1.96
COL4A1P02462 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC27.31■■□□□ 1.96
COL4A1P02462 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC27.31■■□□□ 1.96
COL4A1P02462 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
COL4A1P02462 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC27.31■■□□□ 1.96
COL4A1P02462 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
COL4A1P02462 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
COL4A1P02462 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
COL4A1P02462 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC27.3■■□□□ 1.96
COL4A1P02462 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
COL4A1P02462 EI24-211ENST00000534546 1544 ntTSL 2 BASIC27.3■■□□□ 1.96
COL4A1P02462 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC27.3■■□□□ 1.96
COL4A1P02462 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC27.3■■□□□ 1.96
COL4A1P02462 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
COL4A1P02462 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
COL4A1P02462 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
COL4A1P02462 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC27.29■■□□□ 1.96
COL4A1P02462 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL4A1P02462 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL4A1P02462 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
COL4A1P02462 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL4A1P02462 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC27.29■■□□□ 1.96
COL4A1P02462 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC27.29■■□□□ 1.96
COL4A1P02462 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC27.29■■□□□ 1.96
COL4A1P02462 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
COL4A1P02462 AL353803.4-201ENST00000565882 1934 ntBASIC27.29■■□□□ 1.96
COL4A1P02462 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
COL4A1P02462 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC27.28■■□□□ 1.96
COL4A1P02462 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL4A1P02462 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL4A1P02462 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
COL4A1P02462 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL4A1P02462 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC27.28■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms