Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 SLC25A15P3-201ENST00000505530 290 ntBASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 MYOZ3-205ENST00000520112 605 ntTSL 4 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 AC093752.3-201ENST00000567343 901 ntBASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 AC010328.2-201ENST00000597698 1111 ntBASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 TMPRSS13-201ENST00000430170 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 BCL2L13-202ENST00000337612 4905 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 FAM95B1-212ENST00000592873 4692 ntBASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 SPATA13-203ENST00000382108 8463 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 RB1-201ENST00000267163 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 CRBN-215ENST00000639284 2223 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 MYO19-203ENST00000610930 3271 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 FHOD3-207ENST00000591635 3035 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 SPECC1-206ENST00000395530 8133 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 GGTA1P-205ENST00000495328 3478 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 KRT8P43-201ENST00000406052 1458 ntBASIC14.89□□□□□ -0.03
CCDC112Q8NEF3 ARL13B-210ENST00000535334 3906 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 SLC22A6-202ENST00000377871 2151 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 ACOXL-202ENST00000389811 2714 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 NLRP7-206ENST00000588756 3826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 KRT8P29-201ENST00000420409 1371 ntBASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 BIVM-202ENST00000448849 3198 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 ANKRA2-201ENST00000296785 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 RNF34-203ENST00000392465 2051 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 ST3GAL5-204ENST00000393808 2236 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 BX537318.2-201ENST00000624893 4162 ntBASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 ZNF461-201ENST00000360357 2361 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 ZNF595-203ENST00000608255 1999 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 NME6-203ENST00000415644 849 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 ZNF148-206ENST00000485866 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 ARHGEF4-212ENST00000525839 3828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 AC008805.1-201ENST00000590892 364 ntBASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 CCDC112-201ENST00000379611 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 AC004834.1-202ENST00000638785 1737 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 POM121L4P-202ENST00000427789 1891 ntBASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 FGFR1OP-207ENST00000622353 3451 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 TXNRD1-201ENST00000354940 4082 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 DGKZP1-201ENST00000378718 2776 ntBASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 TRIM25-202ENST00000537230 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 DIP2C-205ENST00000634311 4961 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 TRIM68-201ENST00000300747 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 SPAG8-201ENST00000340291 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 AC245100.6-201ENST00000427169 1918 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 CACNA1G-219ENST00000507609 6849 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 SLC5A11-202ENST00000424767 2399 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 CEP78-205ENST00000424347 11198 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 SLFNL1-202ENST00000359345 4310 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 ARAP3-207ENST00000626478 4928 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 ESPL1-205ENST00000552462 6447 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CCDC112Q8NEF3 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 CHAT-202ENST00000339797 2124 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 CHAT-204ENST00000395559 2114 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 LOXHD1-204ENST00000398705 1824 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 FAM90A7P-201ENST00000382628 1395 ntBASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 FAM90A23P-201ENST00000400136 1395 ntBASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 GYG2-204ENST00000381163 3393 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 ALOXE3-201ENST00000318227 3053 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 ATG16L1-202ENST00000373525 2767 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 ZKSCAN1-202ENST00000426572 2011 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 ADAM8-202ENST00000445355 3279 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 WBP1L-202ENST00000448841 4085 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 TMEM63B-201ENST00000259746 3318 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 MB21D1-201ENST00000370315 3182 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 TISP43-201ENST00000409793 538 ntTSL 4 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 FADS2-212ENST00000522639 360 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC14.87□□□□□ -0.03
CCDC112Q8NEF3 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms