Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC30.03■■■□□ 2.4
USP54Q70EL1 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC30.03■■■□□ 2.4
USP54Q70EL1 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC30.03■■■□□ 2.4
USP54Q70EL1 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
USP54Q70EL1 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
USP54Q70EL1 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
USP54Q70EL1 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC30.01■■■□□ 2.4
USP54Q70EL1 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
USP54Q70EL1 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC30.01■■■□□ 2.4
USP54Q70EL1 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC30.01■■■□□ 2.39
USP54Q70EL1 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
USP54Q70EL1 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC30.01■■■□□ 2.39
USP54Q70EL1 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC30.01■■■□□ 2.39
USP54Q70EL1 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC30.01■■■□□ 2.39
USP54Q70EL1 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
USP54Q70EL1 DLX3-202ENST00000512495 834 ntTSL 2 BASIC30.01■■■□□ 2.39
USP54Q70EL1 AC105233.4-201ENST00000642045 216 ntBASIC30.01■■■□□ 2.39
USP54Q70EL1 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC30■■■□□ 2.39
USP54Q70EL1 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC30■■■□□ 2.39
USP54Q70EL1 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC30■■■□□ 2.39
USP54Q70EL1 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
USP54Q70EL1 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
USP54Q70EL1 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC30■■■□□ 2.39
USP54Q70EL1 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC30■■■□□ 2.39
USP54Q70EL1 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
USP54Q70EL1 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC29.99■■■□□ 2.39
USP54Q70EL1 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC29.99■■■□□ 2.39
USP54Q70EL1 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC29.99■■■□□ 2.39
USP54Q70EL1 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
USP54Q70EL1 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
USP54Q70EL1 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
USP54Q70EL1 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
USP54Q70EL1 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC29.99■■■□□ 2.39
USP54Q70EL1 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
USP54Q70EL1 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC29.99■■■□□ 2.39
USP54Q70EL1 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC29.98■■■□□ 2.39
USP54Q70EL1 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
USP54Q70EL1 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC29.98■■■□□ 2.39
USP54Q70EL1 AC020928.2-201ENST00000588717 2197 ntBASIC29.98■■■□□ 2.39
USP54Q70EL1 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC29.98■■■□□ 2.39
USP54Q70EL1 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC29.98■■■□□ 2.39
USP54Q70EL1 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
USP54Q70EL1 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC29.98■■■□□ 2.39
USP54Q70EL1 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
USP54Q70EL1 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
USP54Q70EL1 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
USP54Q70EL1 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
USP54Q70EL1 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC29.98■■■□□ 2.39
USP54Q70EL1 RAP2CP1-201ENST00000605103 478 ntBASIC29.98■■■□□ 2.39
USP54Q70EL1 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC29.98■■■□□ 2.39
USP54Q70EL1 LINC02228-203ENST00000641970 1355 ntBASIC29.97■■■□□ 2.39
USP54Q70EL1 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
USP54Q70EL1 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC29.97■■■□□ 2.39
USP54Q70EL1 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC29.97■■■□□ 2.39
USP54Q70EL1 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
USP54Q70EL1 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC29.96■■■□□ 2.39
USP54Q70EL1 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
USP54Q70EL1 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
USP54Q70EL1 AC004911.1-201ENST00000416316 871 ntBASIC29.95■■■□□ 2.39
USP54Q70EL1 AC006015.1-201ENST00000429970 570 ntBASIC29.95■■■□□ 2.39
USP54Q70EL1 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC29.95■■■□□ 2.39
USP54Q70EL1 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC29.95■■■□□ 2.39
USP54Q70EL1 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
USP54Q70EL1 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC29.95■■■□□ 2.39
USP54Q70EL1 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC29.95■■■□□ 2.39
USP54Q70EL1 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
USP54Q70EL1 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC29.95■■■□□ 2.38
USP54Q70EL1 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC29.95■■■□□ 2.38
USP54Q70EL1 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
USP54Q70EL1 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC29.95■■■□□ 2.38
USP54Q70EL1 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC29.95■■■□□ 2.38
USP54Q70EL1 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC29.94■■■□□ 2.38
USP54Q70EL1 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC29.94■■■□□ 2.38
USP54Q70EL1 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC29.94■■■□□ 2.38
USP54Q70EL1 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC29.94■■■□□ 2.38
USP54Q70EL1 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC29.94■■■□□ 2.38
USP54Q70EL1 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC29.94■■■□□ 2.38
USP54Q70EL1 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
USP54Q70EL1 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC29.93■■■□□ 2.38
USP54Q70EL1 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC29.93■■■□□ 2.38
USP54Q70EL1 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC29.93■■■□□ 2.38
USP54Q70EL1 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC29.93■■■□□ 2.38
USP54Q70EL1 AC068587.7-201ENST00000641602 218 ntBASIC29.93■■■□□ 2.38
USP54Q70EL1 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC29.93■■■□□ 2.38
USP54Q70EL1 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
USP54Q70EL1 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
USP54Q70EL1 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC29.92■■■□□ 2.38
USP54Q70EL1 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
USP54Q70EL1 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
USP54Q70EL1 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
USP54Q70EL1 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
USP54Q70EL1 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC29.92■■■□□ 2.38
USP54Q70EL1 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
USP54Q70EL1 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC29.92■■■□□ 2.38
USP54Q70EL1 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
USP54Q70EL1 AC004687.1-201ENST00000579003 1625 ntBASIC29.92■■■□□ 2.38
USP54Q70EL1 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC29.91■■■□□ 2.38
USP54Q70EL1 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC29.91■■■□□ 2.38
USP54Q70EL1 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC29.91■■■□□ 2.38
USP54Q70EL1 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC29.91■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms