Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM1O00151 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM1O00151 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM1O00151 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM1O00151 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM1O00151 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM1O00151 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.98■□□□□ 0.95
PDLIM1O00151 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM1O00151 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.98■□□□□ 0.95
PDLIM1O00151 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM1O00151 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM1O00151 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM1O00151 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM1O00151 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
PDLIM1O00151 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM1O00151 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM1O00151 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM1O00151 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM1O00151 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM1O00151 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
PDLIM1O00151 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM1O00151 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.97■□□□□ 0.95
PDLIM1O00151 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
PDLIM1O00151 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM1O00151 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
PDLIM1O00151 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.97■□□□□ 0.95
PDLIM1O00151 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM1O00151 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.97■□□□□ 0.95
PDLIM1O00151 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM1O00151 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM1O00151 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM1O00151 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM1O00151 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
PDLIM1O00151 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM1O00151 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM1O00151 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM1O00151 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.96■□□□□ 0.95
PDLIM1O00151 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PDLIM1O00151 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PDLIM1O00151 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.96■□□□□ 0.95
PDLIM1O00151 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PDLIM1O00151 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.96■□□□□ 0.95
PDLIM1O00151 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
PDLIM1O00151 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PDLIM1O00151 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.96■□□□□ 0.95
PDLIM1O00151 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PDLIM1O00151 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
PDLIM1O00151 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PDLIM1O00151 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.96■□□□□ 0.95
PDLIM1O00151 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.96■□□□□ 0.95
PDLIM1O00151 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.96■□□□□ 0.95
PDLIM1O00151 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDLIM1O00151 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PDLIM1O00151 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.95■□□□□ 0.94
PDLIM1O00151 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDLIM1O00151 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.95■□□□□ 0.94
PDLIM1O00151 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PDLIM1O00151 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
PDLIM1O00151 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDLIM1O00151 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDLIM1O00151 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDLIM1O00151 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM1O00151 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.94■□□□□ 0.94
PDLIM1O00151 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM1O00151 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM1O00151 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM1O00151 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.94■□□□□ 0.94
PDLIM1O00151 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.94■□□□□ 0.94
PDLIM1O00151 AC090877.2-201ENST00000558441 1738 ntBASIC20.94■□□□□ 0.94
PDLIM1O00151 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PDLIM1O00151 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM1O00151 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM1O00151 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.94■□□□□ 0.94
PDLIM1O00151 AC139530.1-201ENST00000575312 1977 ntBASIC20.94■□□□□ 0.94
PDLIM1O00151 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.94■□□□□ 0.94
PDLIM1O00151 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM1O00151 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDLIM1O00151 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDLIM1O00151 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDLIM1O00151 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PDLIM1O00151 C11orf96-202ENST00000528572 1834 ntBASIC20.93■□□□□ 0.94
PDLIM1O00151 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.93■□□□□ 0.94
PDLIM1O00151 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDLIM1O00151 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
PDLIM1O00151 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.93■□□□□ 0.94
PDLIM1O00151 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
PDLIM1O00151 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDLIM1O00151 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PDLIM1O00151 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDLIM1O00151 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDLIM1O00151 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
PDLIM1O00151 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM1O00151 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM1O00151 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM1O00151 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM1O00151 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
PDLIM1O00151 PKD1P6-201ENST00000343738 4769 ntBASIC20.92■□□□□ 0.94
PDLIM1O00151 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.92■□□□□ 0.94
PDLIM1O00151 AC103834.1-201ENST00000520383 144 ntBASIC20.92■□□□□ 0.94
PDLIM1O00151 AC007952.6-201ENST00000573168 2673 ntBASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms