Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC006058.3-201ENST00000606217 1069 ntBASIC23.09■■□□□ 1.29
TTC28Q96AY4 AC231657.2-201ENST00000624556 255 ntBASIC23.09■■□□□ 1.29
TTC28Q96AY4 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
TTC28Q96AY4 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
TTC28Q96AY4 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC23.09■■□□□ 1.29
TTC28Q96AY4 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
TTC28Q96AY4 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC23.09■■□□□ 1.29
TTC28Q96AY4 AC128676.1-201ENST00000454392 318 ntBASIC23.09■■□□□ 1.29
TTC28Q96AY4 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
TTC28Q96AY4 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
TTC28Q96AY4 AC133637.1-201ENST00000624115 1537 ntBASIC23.09■■□□□ 1.29
TTC28Q96AY4 TESC-206ENST00000541210 936 ntTSL 3 BASIC23.08■■□□□ 1.29
TTC28Q96AY4 AL445228.2-201ENST00000605589 952 ntBASIC23.08■■□□□ 1.29
TTC28Q96AY4 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
TTC28Q96AY4 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
TTC28Q96AY4 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
TTC28Q96AY4 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.08■■□□□ 1.29
TTC28Q96AY4 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
TTC28Q96AY4 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.08■■□□□ 1.29
TTC28Q96AY4 ADM-205ENST00000528544 586 ntTSL 2 BASIC23.08■■□□□ 1.29
TTC28Q96AY4 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
TTC28Q96AY4 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
TTC28Q96AY4 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
TTC28Q96AY4 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
TTC28Q96AY4 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC23.07■■□□□ 1.28
TTC28Q96AY4 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
TTC28Q96AY4 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
TTC28Q96AY4 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
TTC28Q96AY4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
TTC28Q96AY4 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
TTC28Q96AY4 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
TTC28Q96AY4 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC23.07■■□□□ 1.28
TTC28Q96AY4 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
TTC28Q96AY4 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC23.06■■□□□ 1.28
TTC28Q96AY4 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TTC28Q96AY4 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
TTC28Q96AY4 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
TTC28Q96AY4 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TTC28Q96AY4 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
TTC28Q96AY4 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC23.06■■□□□ 1.28
TTC28Q96AY4 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.06■■□□□ 1.28
TTC28Q96AY4 MMD2-204ENST00000612910 778 ntTSL 5 BASIC23.06■■□□□ 1.28
TTC28Q96AY4 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
TTC28Q96AY4 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
TTC28Q96AY4 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TTC28Q96AY4 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.05■■□□□ 1.28
TTC28Q96AY4 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC23.05■■□□□ 1.28
TTC28Q96AY4 AC083880.1-201ENST00000608266 535 ntBASIC23.05■■□□□ 1.28
TTC28Q96AY4 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.05■■□□□ 1.28
TTC28Q96AY4 MIR4758-201ENST00000577688 71 ntBASIC23.05■■□□□ 1.28
TTC28Q96AY4 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC23.05■■□□□ 1.28
TTC28Q96AY4 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.05■■□□□ 1.28
TTC28Q96AY4 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
TTC28Q96AY4 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
TTC28Q96AY4 AP004609.3-201ENST00000610705 1884 ntBASIC23.04■■□□□ 1.28
TTC28Q96AY4 RARRES2P4-201ENST00000514074 484 ntBASIC23.04■■□□□ 1.28
TTC28Q96AY4 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC23.04■■□□□ 1.28
TTC28Q96AY4 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
TTC28Q96AY4 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC23.04■■□□□ 1.28
TTC28Q96AY4 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TTC28Q96AY4 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
TTC28Q96AY4 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
TTC28Q96AY4 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.03■■□□□ 1.28
TTC28Q96AY4 AC105036.2-201ENST00000569468 176 ntBASIC23.03■■□□□ 1.28
TTC28Q96AY4 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TTC28Q96AY4 BX005040.4-201ENST00000637145 1518 ntBASIC23.03■■□□□ 1.28
TTC28Q96AY4 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TTC28Q96AY4 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
TTC28Q96AY4 AC141586.4-201ENST00000624558 1573 ntBASIC23.03■■□□□ 1.28
TTC28Q96AY4 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
TTC28Q96AY4 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC23.03■■□□□ 1.28
TTC28Q96AY4 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC23.03■■□□□ 1.28
TTC28Q96AY4 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
TTC28Q96AY4 LINC01023-201ENST00000606054 436 ntBASIC23.03■■□□□ 1.28
TTC28Q96AY4 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC23.03■■□□□ 1.28
TTC28Q96AY4 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC23.03■■□□□ 1.28
TTC28Q96AY4 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TTC28Q96AY4 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC23.02■■□□□ 1.28
TTC28Q96AY4 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.02■■□□□ 1.28
TTC28Q96AY4 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
TTC28Q96AY4 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
TTC28Q96AY4 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
TTC28Q96AY4 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
TTC28Q96AY4 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC23.02■■□□□ 1.28
TTC28Q96AY4 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC23.02■■□□□ 1.28
TTC28Q96AY4 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC23.02■■□□□ 1.28
TTC28Q96AY4 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TTC28Q96AY4 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.01■■□□□ 1.27
TTC28Q96AY4 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.01■■□□□ 1.27
TTC28Q96AY4 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC23.01■■□□□ 1.27
TTC28Q96AY4 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC23.01■■□□□ 1.27
TTC28Q96AY4 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC23.01■■□□□ 1.27
TTC28Q96AY4 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.01■■□□□ 1.27
TTC28Q96AY4 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC23.01■■□□□ 1.27
TTC28Q96AY4 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
TTC28Q96AY4 OR2I1P-207ENST00000453522 948 ntBASIC23.01■■□□□ 1.27
TTC28Q96AY4 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.01■■□□□ 1.27
TTC28Q96AY4 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
TTC28Q96AY4 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23■■□□□ 1.27
TTC28Q96AY4 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms