Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
KRT39Q6A163 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC24.03■■□□□ 1.44
KRT39Q6A163 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.03■■□□□ 1.44
KRT39Q6A163 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
KRT39Q6A163 SRD5A1P1-201ENST00000442297 786 ntBASIC24.03■■□□□ 1.44
KRT39Q6A163 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC24.03■■□□□ 1.44
KRT39Q6A163 AC131281.2-201ENST00000520478 145 ntBASIC24.03■■□□□ 1.44
KRT39Q6A163 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC24.03■■□□□ 1.44
KRT39Q6A163 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
KRT39Q6A163 AC009086.3-201ENST00000623486 1008 ntBASIC24.03■■□□□ 1.44
KRT39Q6A163 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
KRT39Q6A163 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.03■■□□□ 1.44
KRT39Q6A163 AC133561.1-201ENST00000568600 2415 ntBASIC24.02■■□□□ 1.44
KRT39Q6A163 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC24.02■■□□□ 1.44
KRT39Q6A163 MIR4466-201ENST00000606121 54 ntBASIC24.02■■□□□ 1.44
KRT39Q6A163 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC24.02■■□□□ 1.44
KRT39Q6A163 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
KRT39Q6A163 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
KRT39Q6A163 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
KRT39Q6A163 AC012676.1-201ENST00000574705 1949 ntBASIC24.02■■□□□ 1.44
KRT39Q6A163 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
KRT39Q6A163 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC24.01■■□□□ 1.43
KRT39Q6A163 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC24.01■■□□□ 1.43
KRT39Q6A163 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
KRT39Q6A163 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
KRT39Q6A163 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
KRT39Q6A163 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC24.01■■□□□ 1.43
KRT39Q6A163 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
KRT39Q6A163 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC24.01■■□□□ 1.43
KRT39Q6A163 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
KRT39Q6A163 AC099791.2-201ENST00000605725 427 ntBASIC24.01■■□□□ 1.43
KRT39Q6A163 AC131212.1-201ENST00000613771 668 ntBASIC24.01■■□□□ 1.43
KRT39Q6A163 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
KRT39Q6A163 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
KRT39Q6A163 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC24.01■■□□□ 1.43
KRT39Q6A163 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC24.01■■□□□ 1.43
KRT39Q6A163 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
KRT39Q6A163 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
KRT39Q6A163 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
KRT39Q6A163 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC24■■□□□ 1.43
KRT39Q6A163 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
KRT39Q6A163 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC24■■□□□ 1.43
KRT39Q6A163 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC24■■□□□ 1.43
KRT39Q6A163 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC24■■□□□ 1.43
KRT39Q6A163 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC24■■□□□ 1.43
KRT39Q6A163 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC24■■□□□ 1.43
KRT39Q6A163 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
KRT39Q6A163 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
KRT39Q6A163 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC24■■□□□ 1.43
KRT39Q6A163 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
KRT39Q6A163 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.99■■□□□ 1.43
KRT39Q6A163 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
KRT39Q6A163 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
KRT39Q6A163 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
KRT39Q6A163 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
KRT39Q6A163 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
KRT39Q6A163 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
KRT39Q6A163 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
KRT39Q6A163 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC23.99■■□□□ 1.43
KRT39Q6A163 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
KRT39Q6A163 AL499627.2-201ENST00000606283 725 ntBASIC23.99■■□□□ 1.43
KRT39Q6A163 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.99■■□□□ 1.43
KRT39Q6A163 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
KRT39Q6A163 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC23.99■■□□□ 1.43
KRT39Q6A163 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC23.98■■□□□ 1.43
KRT39Q6A163 C1orf229-201ENST00000623686 2258 ntBASIC23.98■■□□□ 1.43
KRT39Q6A163 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
KRT39Q6A163 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
KRT39Q6A163 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.98■■□□□ 1.43
KRT39Q6A163 GTSE1-AS1-202ENST00000623117 1518 ntBASIC23.98■■□□□ 1.43
KRT39Q6A163 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.98■■□□□ 1.43
KRT39Q6A163 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23.98■■□□□ 1.43
KRT39Q6A163 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
KRT39Q6A163 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC23.98■■□□□ 1.43
KRT39Q6A163 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC23.98■■□□□ 1.43
KRT39Q6A163 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
KRT39Q6A163 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
KRT39Q6A163 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
KRT39Q6A163 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
KRT39Q6A163 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
KRT39Q6A163 AC006455.2-201ENST00000429931 906 ntBASIC23.97■■□□□ 1.43
KRT39Q6A163 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC23.97■■□□□ 1.43
KRT39Q6A163 AC092171.4-201ENST00000609130 632 ntBASIC23.97■■□□□ 1.43
KRT39Q6A163 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
KRT39Q6A163 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.97■■□□□ 1.43
KRT39Q6A163 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
KRT39Q6A163 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
KRT39Q6A163 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC23.96■■□□□ 1.43
KRT39Q6A163 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
KRT39Q6A163 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
KRT39Q6A163 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
KRT39Q6A163 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
KRT39Q6A163 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.96■■□□□ 1.43
KRT39Q6A163 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.96■■□□□ 1.43
KRT39Q6A163 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
KRT39Q6A163 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC23.95■■□□□ 1.43
KRT39Q6A163 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC23.95■■□□□ 1.43
KRT39Q6A163 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC23.95■■□□□ 1.43
KRT39Q6A163 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.95■■□□□ 1.43
KRT39Q6A163 COMT-203ENST00000403184 2217 ntTSL 2 BASIC23.95■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms