Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HOXC4P09017 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
HOXC4P09017 TSPY26P-201ENST00000476365 1326 ntBASIC21.86■■□□□ 1.09
HOXC4P09017 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
HOXC4P09017 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HOXC4P09017 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
HOXC4P09017 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
HOXC4P09017 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HOXC4P09017 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HOXC4P09017 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.86■■□□□ 1.09
HOXC4P09017 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HOXC4P09017 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
HOXC4P09017 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
HOXC4P09017 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
HOXC4P09017 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.85■■□□□ 1.09
HOXC4P09017 MIR6821-201ENST00000617625 74 ntBASIC21.85■■□□□ 1.09
HOXC4P09017 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HOXC4P09017 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HOXC4P09017 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
HOXC4P09017 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.85■■□□□ 1.09
HOXC4P09017 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
HOXC4P09017 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
HOXC4P09017 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HOXC4P09017 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HOXC4P09017 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HOXC4P09017 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HOXC4P09017 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
HOXC4P09017 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
HOXC4P09017 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
HOXC4P09017 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HOXC4P09017 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
HOXC4P09017 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
HOXC4P09017 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.83■■□□□ 1.09
HOXC4P09017 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.83■■□□□ 1.09
HOXC4P09017 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.83■■□□□ 1.09
HOXC4P09017 MIR572-201ENST00000384983 95 ntBASIC21.83■■□□□ 1.09
HOXC4P09017 AC097381.1-201ENST00000429019 1296 ntBASIC21.83■■□□□ 1.09
HOXC4P09017 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HOXC4P09017 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HOXC4P09017 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.83■■□□□ 1.09
HOXC4P09017 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.83■■□□□ 1.09
HOXC4P09017 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HOXC4P09017 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HOXC4P09017 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.82■■□□□ 1.08
HOXC4P09017 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.82■■□□□ 1.08
HOXC4P09017 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.82■■□□□ 1.08
HOXC4P09017 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
HOXC4P09017 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.82■■□□□ 1.08
HOXC4P09017 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HOXC4P09017 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.82■■□□□ 1.08
HOXC4P09017 AC068587.7-201ENST00000641602 218 ntBASIC21.82■■□□□ 1.08
HOXC4P09017 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
HOXC4P09017 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HOXC4P09017 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.81■■□□□ 1.08
HOXC4P09017 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.81■■□□□ 1.08
HOXC4P09017 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
HOXC4P09017 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HOXC4P09017 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.81■■□□□ 1.08
HOXC4P09017 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HOXC4P09017 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HOXC4P09017 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.81■■□□□ 1.08
HOXC4P09017 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
HOXC4P09017 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.81■■□□□ 1.08
HOXC4P09017 AL358852.1-201ENST00000623174 1268 ntBASIC21.81■■□□□ 1.08
HOXC4P09017 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.81■■□□□ 1.08
HOXC4P09017 AC092068.2-201ENST00000590491 1708 ntBASIC21.8■■□□□ 1.08
HOXC4P09017 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
HOXC4P09017 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
HOXC4P09017 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC4P09017 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.8■■□□□ 1.08
HOXC4P09017 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
HOXC4P09017 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.8■■□□□ 1.08
HOXC4P09017 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.8■■□□□ 1.08
HOXC4P09017 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.8■■□□□ 1.08
HOXC4P09017 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.8■■□□□ 1.08
HOXC4P09017 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.8■■□□□ 1.08
HOXC4P09017 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC4P09017 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
HOXC4P09017 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC4P09017 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC4P09017 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.79■■□□□ 1.08
HOXC4P09017 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.79■■□□□ 1.08
HOXC4P09017 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
HOXC4P09017 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
HOXC4P09017 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC4P09017 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.79■■□□□ 1.08
HOXC4P09017 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC4P09017 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.78■■□□□ 1.08
HOXC4P09017 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HOXC4P09017 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HOXC4P09017 AC004687.1-201ENST00000579003 1625 ntBASIC21.78■■□□□ 1.08
HOXC4P09017 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HOXC4P09017 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.78■■□□□ 1.08
HOXC4P09017 MIR5787-201ENST00000611784 55 ntBASIC21.78■■□□□ 1.08
HOXC4P09017 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.78■■□□□ 1.08
HOXC4P09017 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.78■■□□□ 1.08
HOXC4P09017 ANOS2P-203ENST00000472227 1816 ntBASIC21.78■■□□□ 1.08
HOXC4P09017 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
HOXC4P09017 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HOXC4P09017 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms