Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.37■□□□□ 0.85
COL6A6A6NMZ7 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A6A6NMZ7 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.37■□□□□ 0.85
COL6A6A6NMZ7 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.37■□□□□ 0.85
COL6A6A6NMZ7 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.37■□□□□ 0.85
COL6A6A6NMZ7 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A6A6NMZ7 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
COL6A6A6NMZ7 AC133637.1-201ENST00000624115 1537 ntBASIC20.36■□□□□ 0.85
COL6A6A6NMZ7 PRORSD1P-201ENST00000295112 541 ntBASIC20.36■□□□□ 0.85
COL6A6A6NMZ7 SLC29A4P1-201ENST00000398760 971 ntBASIC20.36■□□□□ 0.85
COL6A6A6NMZ7 POU5F1P3-201ENST00000428824 1078 ntBASIC20.36■□□□□ 0.85
COL6A6A6NMZ7 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
COL6A6A6NMZ7 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
COL6A6A6NMZ7 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.36■□□□□ 0.85
COL6A6A6NMZ7 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.36■□□□□ 0.85
COL6A6A6NMZ7 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.36■□□□□ 0.85
COL6A6A6NMZ7 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A6A6NMZ7 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.36■□□□□ 0.85
COL6A6A6NMZ7 AC141586.4-201ENST00000624558 1573 ntBASIC20.36■□□□□ 0.85
COL6A6A6NMZ7 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A6A6NMZ7 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A6A6NMZ7 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.35■□□□□ 0.85
COL6A6A6NMZ7 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A6A6NMZ7 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.35■□□□□ 0.85
COL6A6A6NMZ7 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.35■□□□□ 0.85
COL6A6A6NMZ7 DUX4L4-201ENST00000566884 1269 ntBASIC20.35■□□□□ 0.85
COL6A6A6NMZ7 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.35■□□□□ 0.85
COL6A6A6NMZ7 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A6A6NMZ7 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL6A6A6NMZ7 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
COL6A6A6NMZ7 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A6A6NMZ7 AL138781.1-201ENST00000566567 1274 ntBASIC20.34■□□□□ 0.85
COL6A6A6NMZ7 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A6A6NMZ7 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A6A6NMZ7 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A6A6NMZ7 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
COL6A6A6NMZ7 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A6A6NMZ7 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.34■□□□□ 0.85
COL6A6A6NMZ7 AC083906.2-201ENST00000511578 360 ntBASIC20.34■□□□□ 0.85
COL6A6A6NMZ7 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
COL6A6A6NMZ7 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL6A6A6NMZ7 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.85
COL6A6A6NMZ7 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL6A6A6NMZ7 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.33■□□□□ 0.85
COL6A6A6NMZ7 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.33■□□□□ 0.85
COL6A6A6NMZ7 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL6A6A6NMZ7 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
COL6A6A6NMZ7 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.33■□□□□ 0.84
COL6A6A6NMZ7 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL6A6A6NMZ7 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
COL6A6A6NMZ7 AC011767.1-201ENST00000617410 1153 ntBASIC20.33■□□□□ 0.84
COL6A6A6NMZ7 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
COL6A6A6NMZ7 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.33■□□□□ 0.84
COL6A6A6NMZ7 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A6A6NMZ7 TSPY6P-201ENST00000448518 926 ntBASIC20.32■□□□□ 0.84
COL6A6A6NMZ7 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.32■□□□□ 0.84
COL6A6A6NMZ7 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A6A6NMZ7 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.32■□□□□ 0.84
COL6A6A6NMZ7 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
COL6A6A6NMZ7 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
COL6A6A6NMZ7 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.32■□□□□ 0.84
COL6A6A6NMZ7 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A6A6NMZ7 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
COL6A6A6NMZ7 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A6A6NMZ7 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A6A6NMZ7 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A6A6NMZ7 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.31■□□□□ 0.84
COL6A6A6NMZ7 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A6A6NMZ7 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.31■□□□□ 0.84
COL6A6A6NMZ7 OR2I1P-207ENST00000453522 948 ntBASIC20.31■□□□□ 0.84
COL6A6A6NMZ7 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.31■□□□□ 0.84
COL6A6A6NMZ7 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A6A6NMZ7 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
COL6A6A6NMZ7 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A6A6NMZ7 AF201337.1-201ENST00000520239 748 ntBASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.3■□□□□ 0.84
COL6A6A6NMZ7 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.29■□□□□ 0.84
COL6A6A6NMZ7 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL6A6A6NMZ7 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL6A6A6NMZ7 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL6A6A6NMZ7 AL121832.2-201ENST00000610979 668 ntBASIC20.29■□□□□ 0.84
COL6A6A6NMZ7 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL6A6A6NMZ7 AC105233.4-201ENST00000642045 216 ntBASIC20.29■□□□□ 0.84
COL6A6A6NMZ7 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL6A6A6NMZ7 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL6A6A6NMZ7 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.29■□□□□ 0.84
COL6A6A6NMZ7 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms