Protein–RNA interactions for Protein: Q5VT25

CDC42BPA, Serine/threonine-protein kinase MRCK alpha, humanhuman

Predictions only

Length 1,732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPAQ5VT25 LDLRAD1-203ENST00000420619 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDC42BPAQ5VT25 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 PROP1-201ENST00000308304 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 SEPT4-223ENST00000583114 1709 ntTSL 2 BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 MKL1-204ENST00000402630 747 ntTSL 2 BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 FTLP16-201ENST00000446400 513 ntBASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 CCNL2P1-201ENST00000512846 969 ntBASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 AC138305.1-201ENST00000568932 561 ntTSL 5 BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 AC127496.5-202ENST00000572036 869 ntTSL 5 BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 APOL2-203ENST00000451256 1421 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 AL590399.1-202ENST00000429818 1480 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 AL512625.1-202ENST00000476224 1480 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 CLUHP8-201ENST00000547527 1485 ntBASIC20.06■□□□□ 0.8
CDC42BPAQ5VT25 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 GUCY1B3-207ENST00000513437 2355 ntTSL 2 BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 KRT40-202ENST00000398486 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 AACSP1-202ENST00000521412 1095 ntBASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 AP001922.5-201ENST00000527803 651 ntTSL 4 BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 AC006273.1-201ENST00000606966 861 ntBASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 MIF4GD-214ENST00000618645 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 FAM156A-223ENST00000623782 1931 ntAPPRIS P2 TSL 3 BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 AC106785.2-201ENST00000564385 1319 ntBASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 SLC35B3-201ENST00000379660 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 CCT8-211ENST00000540844 1927 ntTSL 2 BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 CKS2-201ENST00000314355 613 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 BNIP1-203ENST00000352523 1143 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 PLPP4-201ENST00000369073 1135 ntTSL 5 BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 RPL13AP5-201ENST00000439189 612 ntBASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 AL049597.1-201ENST00000447415 555 ntBASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 HNRNPA1P9-201ENST00000450624 950 ntBASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 AC012313.2-201ENST00000599952 1154 ntTSL 5 BASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 AC009779.7-201ENST00000609031 469 ntBASIC20.05■□□□□ 0.8
CDC42BPAQ5VT25 POM121L14P-201ENST00000406100 1558 ntBASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 PAX6-255ENST00000639386 1723 ntTSL 5 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 AC005840.4-201ENST00000541242 2494 ntBASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 APTX-201ENST00000309615 1859 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 MAFTRR-201ENST00000562921 1859 ntTSL 5 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 BX005132.1-201ENST00000641403 1580 ntBASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 MRPL36-201ENST00000382647 587 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 MIR181D-201ENST00000384853 137 ntBASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 MYH9-202ENST00000401701 789 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 RN7SKP102-201ENST00000411186 315 ntBASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 AL606970.2-201ENST00000434596 470 ntTSL 3 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 PRKRIP1-202ENST00000462601 884 ntTSL 2 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 PDPN-208ENST00000509009 571 ntTSL 4 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 SNHG21-205ENST00000561107 790 ntTSL 2 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 MARVELD3-205ENST00000567501 582 ntAPPRIS ALT2 TSL 3 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 AC084262.1-201ENST00000567818 751 ntBASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 AC012615.6-203ENST00000590531 272 ntTSL 2 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 AC097634.2-201ENST00000615819 604 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 MIR100HG-219ENST00000533109 1794 ntTSL 5 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 SH3GLB2-206ENST00000417224 1468 ntTSL 5 BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDC42BPAQ5VT25 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms