Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
IFT140Q96RY7 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC21.97■■□□□ 1.11
IFT140Q96RY7 OOEP-201ENST00000370359 478 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
IFT140Q96RY7 LCN12-202ENST00000371633 579 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
IFT140Q96RY7 FKBP1A-201ENST00000381715 705 ntTSL 2 BASIC21.96■■□□□ 1.11
IFT140Q96RY7 SYCP3-203ENST00000392927 1120 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
IFT140Q96RY7 PRADC1P1-201ENST00000412317 525 ntBASIC21.96■■□□□ 1.11
IFT140Q96RY7 AC118758.1-201ENST00000448242 564 ntTSL 4 BASIC21.96■■□□□ 1.11
IFT140Q96RY7 NDUFC1-206ENST00000505036 809 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
IFT140Q96RY7 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
IFT140Q96RY7 FAM9A-201ENST00000381003 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
IFT140Q96RY7 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
IFT140Q96RY7 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC21.96■■□□□ 1.11
IFT140Q96RY7 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
IFT140Q96RY7 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
IFT140Q96RY7 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC21.96■■□□□ 1.11
IFT140Q96RY7 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC21.96■■□□□ 1.11
IFT140Q96RY7 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
IFT140Q96RY7 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
IFT140Q96RY7 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
IFT140Q96RY7 OR2A14-201ENST00000408899 1012 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
IFT140Q96RY7 AL008719.1-201ENST00000430449 473 ntTSL 2 BASIC21.96■■□□□ 1.11
IFT140Q96RY7 AC140481.1-202ENST00000436488 525 ntTSL 2 BASIC21.96■■□□□ 1.11
IFT140Q96RY7 AC022201.1-201ENST00000452525 577 ntTSL 4 BASIC21.96■■□□□ 1.11
IFT140Q96RY7 AC096919.1-201ENST00000472730 652 ntBASIC21.96■■□□□ 1.11
IFT140Q96RY7 AC079944.2-201ENST00000478867 734 ntBASIC21.96■■□□□ 1.11
IFT140Q96RY7 OARD1-214ENST00000486443 764 ntTSL 3 BASIC21.96■■□□□ 1.11
IFT140Q96RY7 AC007731.1-203ENST00000583722 474 ntTSL 2 BASIC21.96■■□□□ 1.11
IFT140Q96RY7 FAM230A-201ENST00000615181 315 ntTSL 5 BASIC21.96■■□□□ 1.11
IFT140Q96RY7 AL731555.1-201ENST00000634547 1259 ntBASIC21.96■■□□□ 1.11
IFT140Q96RY7 STMN1-206ENST00000455785 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
IFT140Q96RY7 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
IFT140Q96RY7 ASGR2-201ENST00000254850 1396 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.11
IFT140Q96RY7 ASGR2-202ENST00000355035 1386 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
IFT140Q96RY7 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.11
IFT140Q96RY7 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC21.95■■□□□ 1.11
IFT140Q96RY7 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.11
IFT140Q96RY7 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.11
IFT140Q96RY7 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.11
IFT140Q96RY7 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
IFT140Q96RY7 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
IFT140Q96RY7 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
IFT140Q96RY7 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC21.95■■□□□ 1.1
IFT140Q96RY7 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
IFT140Q96RY7 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
IFT140Q96RY7 LINC00618-201ENST00000435624 700 ntTSL 5 BASIC21.95■■□□□ 1.1
IFT140Q96RY7 AC145285.1-201ENST00000469929 694 ntBASIC21.95■■□□□ 1.1
IFT140Q96RY7 AC002351.1-201ENST00000546852 590 ntTSL 2 BASIC21.95■■□□□ 1.1
IFT140Q96RY7 ORMDL2-204ENST00000550836 438 ntTSL 3 BASIC21.95■■□□□ 1.1
IFT140Q96RY7 SNHG5-211ENST00000587692 1029 ntTSL 3 BASIC21.95■■□□□ 1.1
IFT140Q96RY7 EIF3K-213ENST00000593149 760 ntTSL 2 BASIC21.95■■□□□ 1.1
IFT140Q96RY7 Metazoa_SRP.97-201ENST00000618280 304 ntBASIC21.95■■□□□ 1.1
IFT140Q96RY7 AC006581.2-201ENST00000631830 455 ntTSL 3 BASIC21.95■■□□□ 1.1
IFT140Q96RY7 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
IFT140Q96RY7 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC21.95■■□□□ 1.1
IFT140Q96RY7 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
IFT140Q96RY7 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC21.95■■□□□ 1.1
IFT140Q96RY7 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 FES-204ENST00000414248 2327 ntTSL 2 BASIC21.94■■□□□ 1.1
IFT140Q96RY7 SLC37A3-203ENST00000447932 3254 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC21.94■■□□□ 1.1
IFT140Q96RY7 JAML-202ENST00000356289 1944 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 TCTE1-201ENST00000371504 616 ntTSL 3 BASIC21.94■■□□□ 1.1
IFT140Q96RY7 CDA-201ENST00000375071 963 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 AL391987.4-201ENST00000377547 439 ntTSL 3 BASIC21.94■■□□□ 1.1
IFT140Q96RY7 PRSS3-203ENST00000379405 834 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 CD33-202ENST00000391796 1089 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 ARF1P2-201ENST00000392493 538 ntBASIC21.94■■□□□ 1.1
IFT140Q96RY7 AL078621.2-201ENST00000419351 698 ntBASIC21.94■■□□□ 1.1
IFT140Q96RY7 CMC2-202ENST00000486645 766 ntTSL 3 BASIC21.94■■□□□ 1.1
IFT140Q96RY7 SNHG15-210ENST00000585030 953 ntTSL 3 BASIC21.94■■□□□ 1.1
IFT140Q96RY7 AC018755.1-201ENST00000601315 1182 ntBASIC21.94■■□□□ 1.1
IFT140Q96RY7 HIST1H2APS4-202ENST00000635537 681 ntBASIC21.94■■□□□ 1.1
IFT140Q96RY7 HTR3D-202ENST00000382489 1674 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC21.94■■□□□ 1.1
IFT140Q96RY7 LAMP2-201ENST00000200639 1867 ntAPPRIS P5 TSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 SLC5A11-203ENST00000449109 2069 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC21.94■■□□□ 1.1
IFT140Q96RY7 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
IFT140Q96RY7 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
IFT140Q96RY7 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
IFT140Q96RY7 AP000897.1-201ENST00000584036 1613 ntBASIC21.93■■□□□ 1.1
IFT140Q96RY7 UGT3A1-203ENST00000503189 1902 ntTSL 2 BASIC21.93■■□□□ 1.1
IFT140Q96RY7 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
IFT140Q96RY7 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
IFT140Q96RY7 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
IFT140Q96RY7 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC21.93■■□□□ 1.1
IFT140Q96RY7 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
IFT140Q96RY7 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC21.93■■□□□ 1.1
IFT140Q96RY7 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
IFT140Q96RY7 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC21.93■■□□□ 1.1
IFT140Q96RY7 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC21.93■■□□□ 1.1
IFT140Q96RY7 CPA5-203ENST00000461828 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
IFT140Q96RY7 POLR1C-202ENST00000372344 1119 ntTSL 5 BASIC21.93■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms