Protein–RNA interactions for Protein: Q5R1H9

Trav7d-4, T cell receptor alpha variable 7D-4 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav7d-4Q5R1H9 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trav7d-4Q5R1H9 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trav7d-4Q5R1H9 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trav7d-4Q5R1H9 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC19.8■□□□□ 0.76
Trav7d-4Q5R1H9 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
Trav7d-4Q5R1H9 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC19.79■□□□□ 0.76
Trav7d-4Q5R1H9 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Trav7d-4Q5R1H9 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Trav7d-4Q5R1H9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trav7d-4Q5R1H9 Gm27325-201ENSMUST00000175467 74 ntBASIC19.74■□□□□ 0.75
Trav7d-4Q5R1H9 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trav7d-4Q5R1H9 Gm43445-201ENSMUST00000198564 2091 ntBASIC19.74■□□□□ 0.75
Trav7d-4Q5R1H9 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trav7d-4Q5R1H9 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trav7d-4Q5R1H9 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trav7d-4Q5R1H9 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav7d-4Q5R1H9 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trav7d-4Q5R1H9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav7d-4Q5R1H9 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trav7d-4Q5R1H9 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav7d-4Q5R1H9 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav7d-4Q5R1H9 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav7d-4Q5R1H9 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trav7d-4Q5R1H9 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trav7d-4Q5R1H9 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Trav7d-4Q5R1H9 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav7d-4Q5R1H9 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav7d-4Q5R1H9 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trav7d-4Q5R1H9 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
Trav7d-4Q5R1H9 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav7d-4Q5R1H9 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav7d-4Q5R1H9 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Trav7d-4Q5R1H9 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC19.58■□□□□ 0.72
Trav7d-4Q5R1H9 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
Trav7d-4Q5R1H9 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trav7d-4Q5R1H9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC19.57■□□□□ 0.72
Trav7d-4Q5R1H9 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trav7d-4Q5R1H9 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trav7d-4Q5R1H9 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC19.56■□□□□ 0.72
Trav7d-4Q5R1H9 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav7d-4Q5R1H9 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trav7d-4Q5R1H9 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav7d-4Q5R1H9 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Trav7d-4Q5R1H9 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav7d-4Q5R1H9 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trav7d-4Q5R1H9 Amer2-203ENSMUST00000225247 2662 ntBASIC19.53■□□□□ 0.72
Trav7d-4Q5R1H9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav7d-4Q5R1H9 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav7d-4Q5R1H9 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav7d-4Q5R1H9 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trav7d-4Q5R1H9 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav7d-4Q5R1H9 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav7d-4Q5R1H9 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav7d-4Q5R1H9 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav7d-4Q5R1H9 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav7d-4Q5R1H9 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trav7d-4Q5R1H9 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav7d-4Q5R1H9 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
Trav7d-4Q5R1H9 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Trav7d-4Q5R1H9 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Trav7d-4Q5R1H9 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav7d-4Q5R1H9 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trav7d-4Q5R1H9 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav7d-4Q5R1H9 Fezf2-202ENSMUST00000224023 1917 ntBASIC19.42■□□□□ 0.7
Trav7d-4Q5R1H9 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trav7d-4Q5R1H9 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Trav7d-4Q5R1H9 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trav7d-4Q5R1H9 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC19.4■□□□□ 0.7
Trav7d-4Q5R1H9 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trav7d-4Q5R1H9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC19.4■□□□□ 0.7
Trav7d-4Q5R1H9 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Trav7d-4Q5R1H9 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trav7d-4Q5R1H9 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trav7d-4Q5R1H9 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trav7d-4Q5R1H9 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trav7d-4Q5R1H9 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trav7d-4Q5R1H9 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trav7d-4Q5R1H9 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Trav7d-4Q5R1H9 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav7d-4Q5R1H9 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trav7d-4Q5R1H9 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Trav7d-4Q5R1H9 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav7d-4Q5R1H9 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav7d-4Q5R1H9 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Trav7d-4Q5R1H9 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav7d-4Q5R1H9 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Trav7d-4Q5R1H9 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav7d-4Q5R1H9 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trav7d-4Q5R1H9 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.28■□□□□ 0.68
Trav7d-4Q5R1H9 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC19.27■□□□□ 0.68
Trav7d-4Q5R1H9 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC19.26■□□□□ 0.67
Trav7d-4Q5R1H9 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav7d-4Q5R1H9 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav7d-4Q5R1H9 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trav7d-4Q5R1H9 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav7d-4Q5R1H9 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav7d-4Q5R1H9 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav7d-4Q5R1H9 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav7d-4Q5R1H9 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav7d-4Q5R1H9 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 14.3 ms