Protein–RNA interactions for Protein: O88895

Hdac3, Histone deacetylase 3, mousemouse

Predictions only

Length 424 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hdac3O88895 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Hdac3O88895 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Hdac3O88895 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Hdac3O88895 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Hdac3O88895 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC23■■□□□ 1.27
Hdac3O88895 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Hdac3O88895 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.26
Hdac3O88895 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
Hdac3O88895 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Hdac3O88895 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC22.92■■□□□ 1.26
Hdac3O88895 Mipep-204ENSMUST00000225043 1548 ntBASIC22.92■■□□□ 1.26
Hdac3O88895 Gm8109-201ENSMUST00000194076 746 ntBASIC22.91■■□□□ 1.26
Hdac3O88895 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
Hdac3O88895 AC166822.3-201ENSMUST00000227394 661 ntBASIC22.89■■□□□ 1.25
Hdac3O88895 Gm6658-202ENSMUST00000209493 1885 ntBASIC22.89■■□□□ 1.25
Hdac3O88895 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Hdac3O88895 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Hdac3O88895 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Hdac3O88895 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Hdac3O88895 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Hdac3O88895 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Hdac3O88895 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
Hdac3O88895 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Hdac3O88895 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
Hdac3O88895 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Hdac3O88895 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Hdac3O88895 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
Hdac3O88895 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Hdac3O88895 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Hdac3O88895 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC22.78■■□□□ 1.24
Hdac3O88895 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Hdac3O88895 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC22.75■■□□□ 1.23
Hdac3O88895 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Hdac3O88895 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Hdac3O88895 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC22.73■■□□□ 1.23
Hdac3O88895 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Hdac3O88895 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Hdac3O88895 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
Hdac3O88895 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Hdac3O88895 Gm9905-201ENSMUST00000065740 1845 ntBASIC22.71■■□□□ 1.23
Hdac3O88895 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
Hdac3O88895 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Hdac3O88895 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Hdac3O88895 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Hdac3O88895 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Hdac3O88895 Zxda-201ENSMUST00000117281 2621 ntBASIC22.66■■□□□ 1.22
Hdac3O88895 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Hdac3O88895 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Hdac3O88895 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Hdac3O88895 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
Hdac3O88895 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Hdac3O88895 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Hdac3O88895 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
Hdac3O88895 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Hdac3O88895 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
Hdac3O88895 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC22.56■■□□□ 1.2
Hdac3O88895 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Hdac3O88895 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
Hdac3O88895 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Hdac3O88895 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC22.54■■□□□ 1.2
Hdac3O88895 Gm6206-201ENSMUST00000133472 2199 ntBASIC22.54■■□□□ 1.2
Hdac3O88895 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
Hdac3O88895 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Hdac3O88895 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Hdac3O88895 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Hdac3O88895 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Hdac3O88895 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Hdac3O88895 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Hdac3O88895 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Hdac3O88895 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Hdac3O88895 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Hdac3O88895 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Hdac3O88895 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Hdac3O88895 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Hdac3O88895 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
Hdac3O88895 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Hdac3O88895 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Hdac3O88895 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Hdac3O88895 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.19
Hdac3O88895 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
Hdac3O88895 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Hdac3O88895 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Hdac3O88895 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Hdac3O88895 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Hdac3O88895 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
Hdac3O88895 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC22.41■■□□□ 1.18
Hdac3O88895 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
Hdac3O88895 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Hdac3O88895 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Hdac3O88895 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Hdac3O88895 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Hdac3O88895 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Hdac3O88895 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Hdac3O88895 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Hdac3O88895 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Hdac3O88895 Peli2-204ENSMUST00000226513 1320 ntBASIC22.36■■□□□ 1.17
Hdac3O88895 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Hdac3O88895 Gm24804-201ENSMUST00000174982 85 ntBASIC22.36■■□□□ 1.17
Hdac3O88895 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Hdac3O88895 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 16.4 ms