Protein–RNA interactions for Protein: O35235

Tnfsf11, Tumor necrosis factor ligand superfamily member 11, mousemouse

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf11O35235 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tnfsf11O35235 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC20.19■□□□□ 0.82
Tnfsf11O35235 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Tnfsf11O35235 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Tnfsf11O35235 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Tnfsf11O35235 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Tnfsf11O35235 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Tnfsf11O35235 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
Tnfsf11O35235 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Tnfsf11O35235 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Tnfsf11O35235 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Tnfsf11O35235 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Tnfsf11O35235 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Tnfsf11O35235 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC20.14■□□□□ 0.81
Tnfsf11O35235 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC20.14■□□□□ 0.81
Tnfsf11O35235 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Tnfsf11O35235 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.13■□□□□ 0.81
Tnfsf11O35235 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.12■□□□□ 0.81
Tnfsf11O35235 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Tnfsf11O35235 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Tnfsf11O35235 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Tnfsf11O35235 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Tnfsf11O35235 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Tnfsf11O35235 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.05■□□□□ 0.8
Tnfsf11O35235 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Tnfsf11O35235 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Tnfsf11O35235 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Tnfsf11O35235 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Tnfsf11O35235 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Tnfsf11O35235 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Tnfsf11O35235 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Tnfsf11O35235 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
Tnfsf11O35235 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Tnfsf11O35235 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Tnfsf11O35235 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Tnfsf11O35235 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Tnfsf11O35235 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Tnfsf11O35235 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Tnfsf11O35235 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Tnfsf11O35235 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Tnfsf11O35235 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Tnfsf11O35235 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Tnfsf11O35235 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
Tnfsf11O35235 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC19.92■□□□□ 0.78
Tnfsf11O35235 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Tnfsf11O35235 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Tnfsf11O35235 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
Tnfsf11O35235 Amer2-203ENSMUST00000225247 2662 ntBASIC19.89■□□□□ 0.77
Tnfsf11O35235 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Tnfsf11O35235 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Tnfsf11O35235 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Tnfsf11O35235 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Tnfsf11O35235 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Tnfsf11O35235 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Tnfsf11O35235 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Tnfsf11O35235 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC19.86■□□□□ 0.77
Tnfsf11O35235 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Tnfsf11O35235 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Tnfsf11O35235 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Tnfsf11O35235 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Tnfsf11O35235 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC19.83■□□□□ 0.77
Tnfsf11O35235 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC19.83■□□□□ 0.77
Tnfsf11O35235 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Tnfsf11O35235 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC19.8■□□□□ 0.76
Tnfsf11O35235 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Tnfsf11O35235 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Tnfsf11O35235 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Tnfsf11O35235 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Tnfsf11O35235 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Tnfsf11O35235 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Tnfsf11O35235 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Tnfsf11O35235 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Tnfsf11O35235 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Tnfsf11O35235 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.77■□□□□ 0.75
Tnfsf11O35235 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Tnfsf11O35235 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Tnfsf11O35235 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
Tnfsf11O35235 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Tnfsf11O35235 Rab21-202ENSMUST00000218831 843 ntBASIC19.76■□□□□ 0.75
Tnfsf11O35235 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Tnfsf11O35235 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Tnfsf11O35235 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Tnfsf11O35235 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Tnfsf11O35235 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC19.72■□□□□ 0.75
Tnfsf11O35235 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Tnfsf11O35235 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Tnfsf11O35235 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Tnfsf11O35235 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Tnfsf11O35235 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Tnfsf11O35235 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Tnfsf11O35235 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Tnfsf11O35235 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Tnfsf11O35235 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Tnfsf11O35235 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Tnfsf11O35235 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Tnfsf11O35235 Fezf2-202ENSMUST00000224023 1917 ntBASIC19.67■□□□□ 0.74
Tnfsf11O35235 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC19.66■□□□□ 0.74
Tnfsf11O35235 Mipep-204ENSMUST00000225043 1548 ntBASIC19.66■□□□□ 0.74
Tnfsf11O35235 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Tnfsf11O35235 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 11.5 ms